miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 11078 0.7 0.851225
Target:  5'- ---uGGCGUGgcgCGCgcccugGAcacggccgccgucuCGGCGCCGCa -3'
miRNA:   3'- auuuUUGCACa--GCGa-----CU--------------GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 48780 0.7 0.852852
Target:  5'- ----uGCGUGUuggUGCUGugguccuACGGCaGCCGCg -3'
miRNA:   3'- auuuuUGCACA---GCGAC-------UGCCG-CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 65768 0.7 0.853661
Target:  5'- -----uCGUG-CGCggcgGGCGGCGgCGCg -3'
miRNA:   3'- auuuuuGCACaGCGa---CUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 40266 0.7 0.853661
Target:  5'- cUGAAAACG-GUCGCguuuccguacgUGGCGGCgggcaacggGCUGCa -3'
miRNA:   3'- -AUUUUUGCaCAGCG-----------ACUGCCG---------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 29795 0.69 0.867097
Target:  5'- -cGGGACuGUGcgggCGCUGGCGGCGCaugggucaacggcaCGCu -3'
miRNA:   3'- auUUUUG-CACa---GCGACUGCCGCG--------------GCG- -5'
6745 3' -52.7 NC_001875.2 + 77085 0.69 0.869401
Target:  5'- -----cUGUuugCGCUGGCGGUGCCGg -3'
miRNA:   3'- auuuuuGCAca-GCGACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 108878 0.69 0.869401
Target:  5'- gGAAAGCGcGgCGgaGGCguacauGGCGCCGCa -3'
miRNA:   3'- aUUUUUGCaCaGCgaCUG------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 6936 0.69 0.869401
Target:  5'- gUGAGcAACGcGUCGU--GCGuGCGCCGCg -3'
miRNA:   3'- -AUUU-UUGCaCAGCGacUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 16890 0.69 0.869401
Target:  5'- ----uGCGUa-CGCgcaGCGGCGCCGCg -3'
miRNA:   3'- auuuuUGCAcaGCGac-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 767 0.69 0.876933
Target:  5'- ---cAugGggcaGCUGACGGCGgCGCg -3'
miRNA:   3'- auuuUugCacagCGACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 96350 0.69 0.876933
Target:  5'- aAAAuACGUcggcucGUUGCUGGCGcacauGCGCUGCa -3'
miRNA:   3'- aUUUuUGCA------CAGCGACUGC-----CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 114504 0.69 0.876933
Target:  5'- ---uGACGcgGUCGCgcGGCGGCGCaacCGCc -3'
miRNA:   3'- auuuUUGCa-CAGCGa-CUGCCGCG---GCG- -5'
6745 3' -52.7 NC_001875.2 + 55334 0.69 0.876933
Target:  5'- gUGAuGACGcGcCGCUucGGgGGCGCCGCc -3'
miRNA:   3'- -AUUuUUGCaCaGCGA--CUgCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 6806 0.69 0.876933
Target:  5'- -cAGAuCGgGUCGCUGAaccagcuGCGCCGCg -3'
miRNA:   3'- auUUUuGCaCAGCGACUgc-----CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 72445 0.69 0.884231
Target:  5'- cAAAAugGUGaUUGCgucGACGG-GCUGCa -3'
miRNA:   3'- aUUUUugCAC-AGCGa--CUGCCgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 101903 0.69 0.884231
Target:  5'- uUAAAAACGUagGcCGCUuuagcGGCGGCGUCGa -3'
miRNA:   3'- -AUUUUUGCA--CaGCGA-----CUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 21081 0.69 0.884231
Target:  5'- aAAAGACG---CGCggcGGCGGuCGCCGCg -3'
miRNA:   3'- aUUUUUGCacaGCGa--CUGCC-GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 34161 0.69 0.884231
Target:  5'- -cGAAugGUGgcgcuuuguUCGUUGccguCGGCGUCGCg -3'
miRNA:   3'- auUUUugCAC---------AGCGACu---GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 68565 0.69 0.884231
Target:  5'- ---cGGCGgcgGUCGCgcaccgcgUGGCGCCGCu -3'
miRNA:   3'- auuuUUGCa--CAGCGacu-----GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 21948 0.69 0.889898
Target:  5'- --uAAACGU-UCGCggcgcggggaugGGCGGCGCCaGCg -3'
miRNA:   3'- auuUUUGCAcAGCGa-----------CUGCCGCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.