miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 115754 0.69 0.891291
Target:  5'- cUAGcgGCGUG-CGCcaaacCGGCGCCGUg -3'
miRNA:   3'- -AUUuuUGCACaGCGacu--GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 95720 0.69 0.891291
Target:  5'- -uGAAACGcGaagUGCaUGAgCGGCGCCGCc -3'
miRNA:   3'- auUUUUGCaCa--GCG-ACU-GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 97767 0.69 0.891291
Target:  5'- --cGGGCGUGUgGCUGuuGGCGCa-- -3'
miRNA:   3'- auuUUUGCACAgCGACugCCGCGgcg -5'
6745 3' -52.7 NC_001875.2 + 33061 0.69 0.894047
Target:  5'- gGAuAGCGUuccgCGCggcuccagacuuugaUGGCGGCGCCGUc -3'
miRNA:   3'- aUUuUUGCAca--GCG---------------ACUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 49747 0.69 0.898107
Target:  5'- -----cCGUaGUCGCUGguGCGGCccaguauguagGCCGCa -3'
miRNA:   3'- auuuuuGCA-CAGCGAC--UGCCG-----------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 66118 0.69 0.898107
Target:  5'- --cGGGCGg--CGa-GGCGGCGCCGCc -3'
miRNA:   3'- auuUUUGCacaGCgaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 89895 0.69 0.898107
Target:  5'- --uGGACGUGUaCGU----GGCGCCGCg -3'
miRNA:   3'- auuUUUGCACA-GCGacugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 50022 0.69 0.898107
Target:  5'- ----cGCGUGgUCGCcgGGCGGCGagGCg -3'
miRNA:   3'- auuuuUGCAC-AGCGa-CUGCCGCggCG- -5'
6745 3' -52.7 NC_001875.2 + 96830 0.69 0.898107
Target:  5'- --uGGACGUuaugCGCgccuuguuUGACGGCGCgCGCa -3'
miRNA:   3'- auuUUUGCAca--GCG--------ACUGCCGCG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 19703 0.68 0.904676
Target:  5'- cGAAgcGAgGUGUacgCGCUGugGGCcgagGCCGUa -3'
miRNA:   3'- aUUU--UUgCACA---GCGACugCCG----CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 7001 0.68 0.904676
Target:  5'- --uGggUGUGcUGCUGGcCGGCGgCGCg -3'
miRNA:   3'- auuUuuGCACaGCGACU-GCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 80285 0.68 0.910995
Target:  5'- --uGAACGgcUCGCacuUGACGaGCGCCGUc -3'
miRNA:   3'- auuUUUGCacAGCG---ACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 127394 0.68 0.910995
Target:  5'- -cAGAGCcUGgccaaagUGCUGGCGGCGCgCGUc -3'
miRNA:   3'- auUUUUGcACa------GCGACUGCCGCG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 75336 0.68 0.910995
Target:  5'- ------gGUGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- auuuuugCACAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 15992 0.68 0.910995
Target:  5'- ---cAACGUGUUGuUUGAcCGGCugcuggGCCGCg -3'
miRNA:   3'- auuuUUGCACAGC-GACU-GCCG------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 73944 0.68 0.910995
Target:  5'- -----cCGUGUacaaGCUgGACGGCGUCGa -3'
miRNA:   3'- auuuuuGCACAg---CGA-CUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 19104 0.68 0.910995
Target:  5'- cAGGGcCGUGUUGCUGuGCGcGCGaCGCg -3'
miRNA:   3'- aUUUUuGCACAGCGAC-UGC-CGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 69178 0.68 0.917061
Target:  5'- cUAAucACGUGcauuaaUCGCgUGcGCGGCGCCGa -3'
miRNA:   3'- -AUUuuUGCAC------AGCG-AC-UGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 32772 0.68 0.917061
Target:  5'- cGAGcGCGUccUCGCgcggcgugGGCgGGCGCCGCg -3'
miRNA:   3'- aUUUuUGCAc-AGCGa-------CUG-CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 33030 0.68 0.917061
Target:  5'- --uAAGCGcagCGC-GGCgGGCGCCGCg -3'
miRNA:   3'- auuUUUGCacaGCGaCUG-CCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.