Results 81 - 100 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 115588 | 0.68 | 0.922873 |
Target: 5'- ----cACGUGacgcacgCGCgUGACGGCcucgucGCCGCa -3' miRNA: 3'- auuuuUGCACa------GCG-ACUGCCG------CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 119695 | 0.68 | 0.922873 |
Target: 5'- cGAAAGCGcugGUUGCgcucgGGCucuuccGCGCCGCg -3' miRNA: 3'- aUUUUUGCa--CAGCGa----CUGc-----CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 90880 | 0.68 | 0.922873 |
Target: 5'- --cGAACGU---GCUGGcCGGgGCCGCg -3' miRNA: 3'- auuUUUGCAcagCGACU-GCCgCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 49400 | 0.68 | 0.922873 |
Target: 5'- gGAGuGCGacaUGUCGCUagaGACGuuuGCGCUGCa -3' miRNA: 3'- aUUUuUGC---ACAGCGA---CUGC---CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 110888 | 0.68 | 0.922873 |
Target: 5'- ----cGCGUuugCGCUgGACGGC-CCGCg -3' miRNA: 3'- auuuuUGCAca-GCGA-CUGCCGcGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 50538 | 0.68 | 0.922873 |
Target: 5'- aGGAGGCGc--CGCcGGCGGCGCgCGUg -3' miRNA: 3'- aUUUUUGCacaGCGaCUGCCGCG-GCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 70016 | 0.68 | 0.919416 |
Target: 5'- gGAAAACGUG-CGCcguguuggcauugauUGuGCGGuCGCUGCg -3' miRNA: 3'- aUUUUUGCACaGCG---------------AC-UGCC-GCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 16066 | 0.68 | 0.917061 |
Target: 5'- --------cGUCGCUGuggacgcacACGGCGCCGg -3' miRNA: 3'- auuuuugcaCAGCGAC---------UGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 118198 | 0.68 | 0.917061 |
Target: 5'- -----uUGUGUUGagcGGCGGCGCgGCa -3' miRNA: 3'- auuuuuGCACAGCga-CUGCCGCGgCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 33030 | 0.68 | 0.917061 |
Target: 5'- --uAAGCGcagCGC-GGCgGGCGCCGCg -3' miRNA: 3'- auuUUUGCacaGCGaCUG-CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 32772 | 0.68 | 0.917061 |
Target: 5'- cGAGcGCGUccUCGCgcggcgugGGCgGGCGCCGCg -3' miRNA: 3'- aUUUuUGCAc-AGCGa-------CUG-CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 69178 | 0.68 | 0.917061 |
Target: 5'- cUAAucACGUGcauuaaUCGCgUGcGCGGCGCCGa -3' miRNA: 3'- -AUUuuUGCAC------AGCG-AC-UGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 127394 | 0.68 | 0.910995 |
Target: 5'- -cAGAGCcUGgccaaagUGCUGGCGGCGCgCGUc -3' miRNA: 3'- auUUUUGcACa------GCGACUGCCGCG-GCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 73944 | 0.68 | 0.910995 |
Target: 5'- -----cCGUGUacaaGCUgGACGGCGUCGa -3' miRNA: 3'- auuuuuGCACAg---CGA-CUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 19104 | 0.68 | 0.910995 |
Target: 5'- cAGGGcCGUGUUGCUGuGCGcGCGaCGCg -3' miRNA: 3'- aUUUUuGCACAGCGAC-UGC-CGCgGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 15992 | 0.68 | 0.910995 |
Target: 5'- ---cAACGUGUUGuUUGAcCGGCugcuggGCCGCg -3' miRNA: 3'- auuuUUGCACAGC-GACU-GCCG------CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 75336 | 0.68 | 0.910995 |
Target: 5'- ------gGUGUUGgUGAUGGCGUCGg -3' miRNA: 3'- auuuuugCACAGCgACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 80285 | 0.68 | 0.910995 |
Target: 5'- --uGAACGgcUCGCacuUGACGaGCGCCGUc -3' miRNA: 3'- auuUUUGCacAGCG---ACUGC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 19703 | 0.68 | 0.904676 |
Target: 5'- cGAAgcGAgGUGUacgCGCUGugGGCcgagGCCGUa -3' miRNA: 3'- aUUU--UUgCACA---GCGACugCCG----CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 7001 | 0.68 | 0.904676 |
Target: 5'- --uGggUGUGcUGCUGGcCGGCGgCGCg -3' miRNA: 3'- auuUuuGCACaGCGACU-GCCGCgGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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