Results 141 - 160 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 5122 | 0.7 | 0.828463 |
Target: 5'- cGGAAAgGUcacGUcCGCgGACGuGCGCCGCu -3' miRNA: 3'- aUUUUUgCA---CA-GCGaCUGC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 65582 | 0.7 | 0.819671 |
Target: 5'- gAAGAGCuUGUCccaGUUGGCGGCGCaguGCg -3' miRNA: 3'- aUUUUUGcACAG---CGACUGCCGCGg--CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 79119 | 0.7 | 0.819671 |
Target: 5'- ---cGGCGuUGUCgGC-GGCgGGCGCCGCg -3' miRNA: 3'- auuuUUGC-ACAG-CGaCUG-CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 77388 | 0.71 | 0.810696 |
Target: 5'- ----------aCGCUGuGCGGCGCCGCg -3' miRNA: 3'- auuuuugcacaGCGAC-UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 8498 | 0.71 | 0.810696 |
Target: 5'- --cGGGCGccGUCcgUGugGGCGCCGCg -3' miRNA: 3'- auuUUUGCa-CAGcgACugCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 125043 | 0.71 | 0.801549 |
Target: 5'- aUAGAGACaUGUUGCUGuuGGCGaaGCu -3' miRNA: 3'- -AUUUUUGcACAGCGACugCCGCggCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 31522 | 0.71 | 0.800625 |
Target: 5'- cGAAGGCGgcggGUCGUUGaACGGCaccacuugcacgcGCUGCa -3' miRNA: 3'- aUUUUUGCa---CAGCGAC-UGCCG-------------CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 54932 | 0.71 | 0.782772 |
Target: 5'- -----uCGUcGUCGCUG--GGCGCCGCc -3' miRNA: 3'- auuuuuGCA-CAGCGACugCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 83399 | 0.71 | 0.782772 |
Target: 5'- ----cGCGgguugGUCGCc-AUGGCGCCGCa -3' miRNA: 3'- auuuuUGCa----CAGCGacUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 79328 | 0.71 | 0.782772 |
Target: 5'- --uGAGCGcGgCGCUGccuuUGGCGCCGCu -3' miRNA: 3'- auuUUUGCaCaGCGACu---GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 113631 | 0.72 | 0.763417 |
Target: 5'- cAAGAGCG----GC-GACGGCGCCGCg -3' miRNA: 3'- aUUUUUGCacagCGaCUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 110159 | 0.72 | 0.763417 |
Target: 5'- -----cCGcGUCGCgcucgucgGGCGGCGUCGCa -3' miRNA: 3'- auuuuuGCaCAGCGa-------CUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 94718 | 0.72 | 0.763417 |
Target: 5'- gAAAGACGcaaaCGCcgGcGCGGCGCCGCg -3' miRNA: 3'- aUUUUUGCaca-GCGa-C-UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 63952 | 0.72 | 0.763417 |
Target: 5'- gGAAGGCGcUGUCGCcGACcGCGCUGa -3' miRNA: 3'- aUUUUUGC-ACAGCGaCUGcCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 44462 | 0.72 | 0.753548 |
Target: 5'- ----cACGuUGUCGUUGGC-GCGCUGCg -3' miRNA: 3'- auuuuUGC-ACAGCGACUGcCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 89375 | 0.72 | 0.753548 |
Target: 5'- ----cGCGUGUUGCUGcguGGCucGCCGCa -3' miRNA: 3'- auuuuUGCACAGCGACug-CCG--CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 60109 | 0.72 | 0.753548 |
Target: 5'- --uAGACGUGUCGCUcguuuACGcUGCCGCa -3' miRNA: 3'- auuUUUGCACAGCGAc----UGCcGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 24274 | 0.72 | 0.743564 |
Target: 5'- --cAAGCuUGU-GC-GACGGCGCCGCg -3' miRNA: 3'- auuUUUGcACAgCGaCUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 99744 | 0.72 | 0.743564 |
Target: 5'- cGuuAACGUGaCGCUGugugcguuUGGCGCCGUu -3' miRNA: 3'- aUuuUUGCACaGCGACu-------GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 36087 | 0.72 | 0.734489 |
Target: 5'- -cAAGACGcGcUCGCgcggcagcacgcggcGGCGGCGCCGCu -3' miRNA: 3'- auUUUUGCaC-AGCGa--------------CUGCCGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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