miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 44462 0.72 0.753548
Target:  5'- ----cACGuUGUCGUUGGC-GCGCUGCg -3'
miRNA:   3'- auuuuUGC-ACAGCGACUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 46206 0.67 0.938776
Target:  5'- --cGAGCucGUUGagUGGCGGCGCUGCg -3'
miRNA:   3'- auuUUUGcaCAGCg-ACUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 47445 0.67 0.952401
Target:  5'- uUGAAucCGUGuacaUCGgUGAaauUGGUGCCGCa -3'
miRNA:   3'- -AUUUuuGCAC----AGCgACU---GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 48400 0.68 0.922873
Target:  5'- uUGAAuACGUGUUGCuucaauUGaACGGCaGCgCGCa -3'
miRNA:   3'- -AUUUuUGCACAGCG------AC-UGCCG-CG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 48780 0.7 0.852852
Target:  5'- ----uGCGUGUuggUGCUGugguccuACGGCaGCCGCg -3'
miRNA:   3'- auuuuUGCACA---GCGAC-------UGCCG-CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 48808 0.67 0.944033
Target:  5'- uUAAAAA-GUGcuaacaugcuccgcgCGCU-ACGGCGCCGCu -3'
miRNA:   3'- -AUUUUUgCACa--------------GCGAcUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 49400 0.68 0.922873
Target:  5'- gGAGuGCGacaUGUCGCUagaGACGuuuGCGCUGCa -3'
miRNA:   3'- aUUUuUGC---ACAGCGA---CUGC---CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 49442 0.66 0.970279
Target:  5'- -cGAAACcg--CGCggcugacggugGACGGCGCCGUg -3'
miRNA:   3'- auUUUUGcacaGCGa----------CUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 49747 0.69 0.898107
Target:  5'- -----cCGUaGUCGCUGguGCGGCccaguauguagGCCGCa -3'
miRNA:   3'- auuuuuGCA-CAGCGAC--UGCCG-----------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 50022 0.69 0.898107
Target:  5'- ----cGCGUGgUCGCcgGGCGGCGagGCg -3'
miRNA:   3'- auuuuUGCAC-AGCGa-CUGCCGCggCG- -5'
6745 3' -52.7 NC_001875.2 + 50211 0.7 0.837064
Target:  5'- cGAGAACGUGUCaacaaacaGCcguuUGgcGCGGCGCgGCa -3'
miRNA:   3'- aUUUUUGCACAG--------CG----AC--UGCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 50538 0.68 0.922873
Target:  5'- aGGAGGCGc--CGCcGGCGGCGCgCGUg -3'
miRNA:   3'- aUUUUUGCacaGCGaCUGCCGCG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 54003 0.66 0.956447
Target:  5'- --------gGUCGCgcacggccuUGGCGGCGCgCGCg -3'
miRNA:   3'- auuuuugcaCAGCG---------ACUGCCGCG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 54446 0.74 0.618504
Target:  5'- ---uGGCG-GUCGUUagccGCGGCGCCGCa -3'
miRNA:   3'- auuuUUGCaCAGCGAc---UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 54932 0.71 0.782772
Target:  5'- -----uCGUcGUCGCUG--GGCGCCGCc -3'
miRNA:   3'- auuuuuGCA-CAGCGACugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 54946 0.67 0.943568
Target:  5'- -cAAAACGUGgUGCuUGuuguaGGCGCCGUc -3'
miRNA:   3'- auUUUUGCACaGCG-ACug---CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 55334 0.69 0.876933
Target:  5'- gUGAuGACGcGcCGCUucGGgGGCGCCGCc -3'
miRNA:   3'- -AUUuUUGCaCaGCGA--CUgCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 55717 0.66 0.969977
Target:  5'- cAuuGACGUGgCGCUGgaaaaggagcgcuACGGCG-CGCc -3'
miRNA:   3'- aUuuUUGCACaGCGAC-------------UGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 57675 0.74 0.659741
Target:  5'- -cAAAACGcGUCcaaGCUGGCggcggcgGGCGCCGCg -3'
miRNA:   3'- auUUUUGCaCAG---CGACUG-------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 58625 0.67 0.943568
Target:  5'- ---uGACGgccagUGCUGA-GGCGCUGCa -3'
miRNA:   3'- auuuUUGCaca--GCGACUgCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.