Results 101 - 120 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 73604 | 0.68 | 0.928429 |
Target: 5'- --cGAGCGccaacUGUUGC-GGCGGCgGCUGCg -3' miRNA: 3'- auuUUUGC-----ACAGCGaCUGCCG-CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 73944 | 0.68 | 0.910995 |
Target: 5'- -----cCGUGUacaaGCUgGACGGCGUCGa -3' miRNA: 3'- auuuuuGCACAg---CGA-CUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 74094 | 0.72 | 0.723294 |
Target: 5'- aGGAGGCGUuUCGC-GACuacGCGCCGCg -3' miRNA: 3'- aUUUUUGCAcAGCGaCUGc--CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 75296 | 0.66 | 0.970279 |
Target: 5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3' miRNA: 3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 75336 | 0.68 | 0.910995 |
Target: 5'- ------gGUGUUGgUGAUGGCGUCGg -3' miRNA: 3'- auuuuugCACAGCgACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 75374 | 0.66 | 0.970279 |
Target: 5'- --uGAugGcGUUGgUGAUGGCGUCGg -3' miRNA: 3'- auuUUugCaCAGCgACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 75415 | 0.66 | 0.963823 |
Target: 5'- gUGAugGCGUcggcGUUGgUGAUGGCGUCGg -3' miRNA: 3'- -AUUuuUGCA----CAGCgACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 75446 | 0.66 | 0.970279 |
Target: 5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3' miRNA: 3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 75476 | 0.66 | 0.970279 |
Target: 5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3' miRNA: 3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 77085 | 0.69 | 0.869401 |
Target: 5'- -----cUGUuugCGCUGGCGGUGCCGg -3' miRNA: 3'- auuuuuGCAca-GCGACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 77388 | 0.71 | 0.810696 |
Target: 5'- ----------aCGCUGuGCGGCGCCGCg -3' miRNA: 3'- auuuuugcacaGCGAC-UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 78154 | 0.82 | 0.256457 |
Target: 5'- --cAAACGUGUuggCGCUGcGCGGCGCCGUc -3' miRNA: 3'- auuUUUGCACA---GCGAC-UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 79119 | 0.7 | 0.819671 |
Target: 5'- ---cGGCGuUGUCgGC-GGCgGGCGCCGCg -3' miRNA: 3'- auuuUUGC-ACAG-CGaCUG-CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 79328 | 0.71 | 0.782772 |
Target: 5'- --uGAGCGcGgCGCUGccuuUGGCGCCGCu -3' miRNA: 3'- auuUUUGCaCaGCGACu---GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 80285 | 0.68 | 0.910995 |
Target: 5'- --uGAACGgcUCGCacuUGACGaGCGCCGUc -3' miRNA: 3'- auuUUUGCacAGCG---ACUGC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 80603 | 0.66 | 0.956447 |
Target: 5'- aAAGAAUG-GUCGUcacgGugGGCG-CGCg -3' miRNA: 3'- aUUUUUGCaCAGCGa---CugCCGCgGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 80629 | 0.66 | 0.967163 |
Target: 5'- -cGGAACGcG-CGCUcgacgGGCGGCGCCa- -3' miRNA: 3'- auUUUUGCaCaGCGA-----CUGCCGCGGcg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 80815 | 0.66 | 0.967163 |
Target: 5'- ----cACGUG--GCUG-UGGCGCCGUu -3' miRNA: 3'- auuuuUGCACagCGACuGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 83328 | 0.66 | 0.970279 |
Target: 5'- --uAAACGcgGUC-UUGACguGGUGCCGCa -3' miRNA: 3'- auuUUUGCa-CAGcGACUG--CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 83399 | 0.71 | 0.782772 |
Target: 5'- ----cGCGgguugGUCGCc-AUGGCGCCGCa -3' miRNA: 3'- auuuuUGCa----CAGCGacUGCCGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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