miRNA display CGI


Results 121 - 140 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 86089 0.7 0.845466
Target:  5'- ------gGUGUCGggcuCGGCGCCGCg -3'
miRNA:   3'- auuuuugCACAGCgacuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 86911 0.73 0.68183
Target:  5'- cGAAAACGaggCGCUGAa-GCGCCGCc -3'
miRNA:   3'- aUUUUUGCacaGCGACUgcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 88231 0.7 0.837064
Target:  5'- cAAAAACGg--CGCaagcGGCGcGCGCCGCc -3'
miRNA:   3'- aUUUUUGCacaGCGa---CUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 88965 0.67 0.952401
Target:  5'- uUGAAcGCGUugCGCUGGCGgaccuGCGCCuGCg -3'
miRNA:   3'- -AUUUuUGCAcaGCGACUGC-----CGCGG-CG- -5'
6745 3' -52.7 NC_001875.2 + 89272 0.66 0.956447
Target:  5'- ----cGCGUG-CGCcGACcuGGCGCgGCu -3'
miRNA:   3'- auuuuUGCACaGCGaCUG--CCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 89375 0.72 0.753548
Target:  5'- ----cGCGUGUUGCUGcguGGCucGCCGCa -3'
miRNA:   3'- auuuuUGCACAGCGACug-CCG--CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 89895 0.69 0.898107
Target:  5'- --uGGACGUGUaCGU----GGCGCCGCg -3'
miRNA:   3'- auuUUUGCACA-GCGacugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 90880 0.68 0.922873
Target:  5'- --cGAACGU---GCUGGcCGGgGCCGCg -3'
miRNA:   3'- auuUUUGCAcagCGACU-GCCgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 91159 0.7 0.828463
Target:  5'- gAuuGACG-GUCGCgcaauugGACGGaauguCGCCGCg -3'
miRNA:   3'- aUuuUUGCaCAGCGa------CUGCC-----GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 91228 0.7 0.837064
Target:  5'- gAGGcGCGUGguggCGCccaccACGGCGCCGUa -3'
miRNA:   3'- aUUUuUGCACa---GCGac---UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 94011 0.67 0.952401
Target:  5'- ---cAGCGUGUCGUacgUGAUcgccaccgccuuGGCGUCGUc -3'
miRNA:   3'- auuuUUGCACAGCG---ACUG------------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 94718 0.72 0.763417
Target:  5'- gAAAGACGcaaaCGCcgGcGCGGCGCCGCg -3'
miRNA:   3'- aUUUUUGCaca-GCGa-C-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 95242 0.66 0.967163
Target:  5'- cAAGGGCGacgCGCagcGGCuGCGCCGCa -3'
miRNA:   3'- aUUUUUGCacaGCGa--CUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 95720 0.69 0.891291
Target:  5'- -uGAAACGcGaagUGCaUGAgCGGCGCCGCc -3'
miRNA:   3'- auUUUUGCaCa--GCG-ACU-GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 96350 0.69 0.876933
Target:  5'- aAAAuACGUcggcucGUUGCUGGCGcacauGCGCUGCa -3'
miRNA:   3'- aUUUuUGCA------CAGCGACUGC-----CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 96830 0.69 0.898107
Target:  5'- --uGGACGUuaugCGCgccuuguuUGACGGCGCgCGCa -3'
miRNA:   3'- auuUUUGCAca--GCG--------ACUGCCGCG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 97412 0.74 0.650237
Target:  5'- uUGAuuAUG-GUCGC-GGCGGCGaCCGCg -3'
miRNA:   3'- -AUUuuUGCaCAGCGaCUGCCGC-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 97767 0.69 0.891291
Target:  5'- --cGGGCGUGUgGCUGuuGGCGCa-- -3'
miRNA:   3'- auuUUUGCACAgCGACugCCGCGgcg -5'
6745 3' -52.7 NC_001875.2 + 97931 0.68 0.926789
Target:  5'- ---cAACGUGUCGCUGcACcaaaccgaccccgaGGCGCUa- -3'
miRNA:   3'- auuuUUGCACAGCGAC-UG--------------CCGCGGcg -5'
6745 3' -52.7 NC_001875.2 + 98746 0.75 0.597389
Target:  5'- ----uGCGUGcucagcCGC-GACGGCGCCGCc -3'
miRNA:   3'- auuuuUGCACa-----GCGaCUGCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.