miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 102026 0.74 0.639663
Target:  5'- ---cAGCGUGcCGUUGACccauGCGCCGCc -3'
miRNA:   3'- auuuUUGCACaGCGACUGc---CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 101903 0.69 0.884231
Target:  5'- uUAAAAACGUagGcCGCUuuagcGGCGGCGUCGa -3'
miRNA:   3'- -AUUUUUGCA--CaGCGA-----CUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 101642 0.66 0.970279
Target:  5'- ---cAACGgccGUCGCggcGaACGGCGCCa- -3'
miRNA:   3'- auuuUUGCa--CAGCGa--C-UGCCGCGGcg -5'
6745 3' -52.7 NC_001875.2 + 101173 0.66 0.967163
Target:  5'- ----cGCGUGgCGCUGGucaauuacgugcCGGCGCC-Ca -3'
miRNA:   3'- auuuuUGCACaGCGACU------------GCCGCGGcG- -5'
6745 3' -52.7 NC_001875.2 + 101100 0.66 0.960253
Target:  5'- aUAAAAGCGggGUCGCcgcUGAC-GCaCCGCu -3'
miRNA:   3'- -AUUUUUGCa-CAGCG---ACUGcCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 100249 0.67 0.948109
Target:  5'- ----uGCuUGUCGCuauugUGugGGCGgCGCg -3'
miRNA:   3'- auuuuUGcACAGCG-----ACugCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 100057 0.73 0.692287
Target:  5'- -----uUGUGgaGCUGACGGUGCUGCu -3'
miRNA:   3'- auuuuuGCACagCGACUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 99744 0.72 0.743564
Target:  5'- cGuuAACGUGaCGCUGugugcguuUGGCGCCGUu -3'
miRNA:   3'- aUuuUUGCACaGCGACu-------GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 99384 0.66 0.973177
Target:  5'- -cAAAGCGc--CGCaccGGCGGCGCCaGCg -3'
miRNA:   3'- auUUUUGCacaGCGa--CUGCCGCGG-CG- -5'
6745 3' -52.7 NC_001875.2 + 98746 0.75 0.597389
Target:  5'- ----uGCGUGcucagcCGC-GACGGCGCCGCc -3'
miRNA:   3'- auuuuUGCACa-----GCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 97931 0.68 0.926789
Target:  5'- ---cAACGUGUCGCUGcACcaaaccgaccccgaGGCGCUa- -3'
miRNA:   3'- auuuUUGCACAGCGAC-UG--------------CCGCGGcg -5'
6745 3' -52.7 NC_001875.2 + 97767 0.69 0.891291
Target:  5'- --cGGGCGUGUgGCUGuuGGCGCa-- -3'
miRNA:   3'- auuUUUGCACAgCGACugCCGCGgcg -5'
6745 3' -52.7 NC_001875.2 + 97412 0.74 0.650237
Target:  5'- uUGAuuAUG-GUCGC-GGCGGCGaCCGCg -3'
miRNA:   3'- -AUUuuUGCaCAGCGaCUGCCGC-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 96830 0.69 0.898107
Target:  5'- --uGGACGUuaugCGCgccuuguuUGACGGCGCgCGCa -3'
miRNA:   3'- auuUUUGCAca--GCG--------ACUGCCGCG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 96350 0.69 0.876933
Target:  5'- aAAAuACGUcggcucGUUGCUGGCGcacauGCGCUGCa -3'
miRNA:   3'- aUUUuUGCA------CAGCGACUGC-----CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 95720 0.69 0.891291
Target:  5'- -uGAAACGcGaagUGCaUGAgCGGCGCCGCc -3'
miRNA:   3'- auUUUUGCaCa--GCG-ACU-GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 95242 0.66 0.967163
Target:  5'- cAAGGGCGacgCGCagcGGCuGCGCCGCa -3'
miRNA:   3'- aUUUUUGCacaGCGa--CUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 94718 0.72 0.763417
Target:  5'- gAAAGACGcaaaCGCcgGcGCGGCGCCGCg -3'
miRNA:   3'- aUUUUUGCaca-GCGa-C-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 94011 0.67 0.952401
Target:  5'- ---cAGCGUGUCGUacgUGAUcgccaccgccuuGGCGUCGUc -3'
miRNA:   3'- auuuUUGCACAGCG---ACUG------------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 91228 0.7 0.837064
Target:  5'- gAGGcGCGUGguggCGCccaccACGGCGCCGUa -3'
miRNA:   3'- aUUUuUGCACa---GCGac---UGCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.