miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 91159 0.7 0.828463
Target:  5'- gAuuGACG-GUCGCgcaauugGACGGaauguCGCCGCg -3'
miRNA:   3'- aUuuUUGCaCAGCGa------CUGCC-----GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 90880 0.68 0.922873
Target:  5'- --cGAACGU---GCUGGcCGGgGCCGCg -3'
miRNA:   3'- auuUUUGCAcagCGACU-GCCgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 89895 0.69 0.898107
Target:  5'- --uGGACGUGUaCGU----GGCGCCGCg -3'
miRNA:   3'- auuUUUGCACA-GCGacugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 89375 0.72 0.753548
Target:  5'- ----cGCGUGUUGCUGcguGGCucGCCGCa -3'
miRNA:   3'- auuuuUGCACAGCGACug-CCG--CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 89272 0.66 0.956447
Target:  5'- ----cGCGUG-CGCcGACcuGGCGCgGCu -3'
miRNA:   3'- auuuuUGCACaGCGaCUG--CCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 88965 0.67 0.952401
Target:  5'- uUGAAcGCGUugCGCUGGCGgaccuGCGCCuGCg -3'
miRNA:   3'- -AUUUuUGCAcaGCGACUGC-----CGCGG-CG- -5'
6745 3' -52.7 NC_001875.2 + 88231 0.7 0.837064
Target:  5'- cAAAAACGg--CGCaagcGGCGcGCGCCGCc -3'
miRNA:   3'- aUUUUUGCacaGCGa---CUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 86911 0.73 0.68183
Target:  5'- cGAAAACGaggCGCUGAa-GCGCCGCc -3'
miRNA:   3'- aUUUUUGCacaGCGACUgcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 86089 0.7 0.845466
Target:  5'- ------gGUGUCGggcuCGGCGCCGCg -3'
miRNA:   3'- auuuuugCACAGCgacuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 83399 0.71 0.782772
Target:  5'- ----cGCGgguugGUCGCc-AUGGCGCCGCa -3'
miRNA:   3'- auuuuUGCa----CAGCGacUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 83328 0.66 0.970279
Target:  5'- --uAAACGcgGUC-UUGACguGGUGCCGCa -3'
miRNA:   3'- auuUUUGCa-CAGcGACUG--CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 80815 0.66 0.967163
Target:  5'- ----cACGUG--GCUG-UGGCGCCGUu -3'
miRNA:   3'- auuuuUGCACagCGACuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 80629 0.66 0.967163
Target:  5'- -cGGAACGcG-CGCUcgacgGGCGGCGCCa- -3'
miRNA:   3'- auUUUUGCaCaGCGA-----CUGCCGCGGcg -5'
6745 3' -52.7 NC_001875.2 + 80603 0.66 0.956447
Target:  5'- aAAGAAUG-GUCGUcacgGugGGCG-CGCg -3'
miRNA:   3'- aUUUUUGCaCAGCGa---CugCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 80285 0.68 0.910995
Target:  5'- --uGAACGgcUCGCacuUGACGaGCGCCGUc -3'
miRNA:   3'- auuUUUGCacAGCG---ACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 79328 0.71 0.782772
Target:  5'- --uGAGCGcGgCGCUGccuuUGGCGCCGCu -3'
miRNA:   3'- auuUUUGCaCaGCGACu---GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 79119 0.7 0.819671
Target:  5'- ---cGGCGuUGUCgGC-GGCgGGCGCCGCg -3'
miRNA:   3'- auuuUUGC-ACAG-CGaCUG-CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 78154 0.82 0.256457
Target:  5'- --cAAACGUGUuggCGCUGcGCGGCGCCGUc -3'
miRNA:   3'- auuUUUGCACA---GCGAC-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 77388 0.71 0.810696
Target:  5'- ----------aCGCUGuGCGGCGCCGCg -3'
miRNA:   3'- auuuuugcacaGCGAC-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 77085 0.69 0.869401
Target:  5'- -----cUGUuugCGCUGGCGGUGCCGg -3'
miRNA:   3'- auuuuuGCAca-GCGACUGCCGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.