miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 75476 0.66 0.970279
Target:  5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 75446 0.66 0.970279
Target:  5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 75415 0.66 0.963823
Target:  5'- gUGAugGCGUcggcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- -AUUuuUGCA----CAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 75374 0.66 0.970279
Target:  5'- --uGAugGcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- auuUUugCaCAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 75336 0.68 0.910995
Target:  5'- ------gGUGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- auuuuugCACAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 75296 0.66 0.970279
Target:  5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 74094 0.72 0.723294
Target:  5'- aGGAGGCGUuUCGC-GACuacGCGCCGCg -3'
miRNA:   3'- aUUUUUGCAcAGCGaCUGc--CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 73944 0.68 0.910995
Target:  5'- -----cCGUGUacaaGCUgGACGGCGUCGa -3'
miRNA:   3'- auuuuuGCACAg---CGA-CUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 73604 0.68 0.928429
Target:  5'- --cGAGCGccaacUGUUGC-GGCGGCgGCUGCg -3'
miRNA:   3'- auuUUUGC-----ACAGCGaCUGCCG-CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 72445 0.69 0.884231
Target:  5'- cAAAAugGUGaUUGCgucGACGG-GCUGCa -3'
miRNA:   3'- aUUUUugCAC-AGCGa--CUGCCgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 72036 0.66 0.956054
Target:  5'- cGuuGACcagGUCGUUGACGuuuguaaGCGCUGCg -3'
miRNA:   3'- aUuuUUGca-CAGCGACUGC-------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 71122 0.66 0.969977
Target:  5'- ------gGUGUUGCUGuggcuggGCGGCcucagcgcgGCCGCg -3'
miRNA:   3'- auuuuugCACAGCGAC-------UGCCG---------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 70604 0.66 0.966185
Target:  5'- aAAAGACGgg-CGCUacauggccugccccGAacauuuguacgaCGGCGCCGCg -3'
miRNA:   3'- aUUUUUGCacaGCGA--------------CU------------GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 70016 0.68 0.919416
Target:  5'- gGAAAACGUG-CGCcguguuggcauugauUGuGCGGuCGCUGCg -3'
miRNA:   3'- aUUUUUGCACaGCG---------------AC-UGCC-GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 69591 0.66 0.956447
Target:  5'- gGAGuACGUGUggCGCUuuacGCGGCGCgCGUc -3'
miRNA:   3'- aUUUuUGCACA--GCGAc---UGCCGCG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 69178 0.68 0.917061
Target:  5'- cUAAucACGUGcauuaaUCGCgUGcGCGGCGCCGa -3'
miRNA:   3'- -AUUuuUGCAC------AGCG-AC-UGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 68565 0.69 0.884231
Target:  5'- ---cGGCGgcgGUCGCgcaccgcgUGGCGCCGCu -3'
miRNA:   3'- auuuUUGCa--CAGCGacu-----GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 67620 0.66 0.955259
Target:  5'- cUAAGAGCGUG-CGCaagaagcuggaaauUGAacaGGCGCUGg -3'
miRNA:   3'- -AUUUUUGCACaGCG--------------ACUg--CCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 67142 0.67 0.943568
Target:  5'- -----cCGUGUUGCUG-CGGCuGuCUGCg -3'
miRNA:   3'- auuuuuGCACAGCGACuGCCG-C-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 66118 0.69 0.898107
Target:  5'- --cGGGCGg--CGa-GGCGGCGCCGCc -3'
miRNA:   3'- auuUUUGCacaGCgaCUGCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.