Results 101 - 120 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 65768 | 0.7 | 0.853661 |
Target: 5'- -----uCGUG-CGCggcgGGCGGCGgCGCg -3' miRNA: 3'- auuuuuGCACaGCGa---CUGCCGCgGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 65714 | 0.7 | 0.845466 |
Target: 5'- ----cAC-UGUucCGCgGGCGGCGCCGCc -3' miRNA: 3'- auuuuUGcACA--GCGaCUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 65582 | 0.7 | 0.819671 |
Target: 5'- gAAGAGCuUGUCccaGUUGGCGGCGCaguGCg -3' miRNA: 3'- aUUUUUGcACAG---CGACUGCCGCGg--CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 65436 | 0.66 | 0.970279 |
Target: 5'- ---cGGCGUGcacCGCUGGCGGUcgGUgGCc -3' miRNA: 3'- auuuUUGCACa--GCGACUGCCG--CGgCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 63952 | 0.72 | 0.763417 |
Target: 5'- gGAAGGCGcUGUCGCcGACcGCGCUGa -3' miRNA: 3'- aUUUUUGC-ACAGCGaCUGcCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 62623 | 0.67 | 0.932166 |
Target: 5'- ----cGCGcGUCGCccgaacaagcguacUGGCcgucGGCGCCGCg -3' miRNA: 3'- auuuuUGCaCAGCG--------------ACUG----CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 60109 | 0.72 | 0.753548 |
Target: 5'- --uAGACGUGUCGCUcguuuACGcUGCCGCa -3' miRNA: 3'- auuUUUGCACAGCGAc----UGCcGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 59597 | 0.66 | 0.972614 |
Target: 5'- ---cGACGUGcgcgagcacgggCGCuuuggcggauUGGCGGaCGCCGCg -3' miRNA: 3'- auuuUUGCACa-----------GCG----------ACUGCC-GCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 59092 | 0.81 | 0.296822 |
Target: 5'- cGGAAACG-GUUuccagGCUGACGGCGUCGCu -3' miRNA: 3'- aUUUUUGCaCAG-----CGACUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 58625 | 0.67 | 0.943568 |
Target: 5'- ---uGACGgccagUGCUGA-GGCGCUGCa -3' miRNA: 3'- auuuUUGCaca--GCGACUgCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 57675 | 0.74 | 0.659741 |
Target: 5'- -cAAAACGcGUCcaaGCUGGCggcggcgGGCGCCGCg -3' miRNA: 3'- auUUUUGCaCAG---CGACUG-------CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 55717 | 0.66 | 0.969977 |
Target: 5'- cAuuGACGUGgCGCUGgaaaaggagcgcuACGGCG-CGCc -3' miRNA: 3'- aUuuUUGCACaGCGAC-------------UGCCGCgGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 55334 | 0.69 | 0.876933 |
Target: 5'- gUGAuGACGcGcCGCUucGGgGGCGCCGCc -3' miRNA: 3'- -AUUuUUGCaCaGCGA--CUgCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 54946 | 0.67 | 0.943568 |
Target: 5'- -cAAAACGUGgUGCuUGuuguaGGCGCCGUc -3' miRNA: 3'- auUUUUGCACaGCG-ACug---CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 54932 | 0.71 | 0.782772 |
Target: 5'- -----uCGUcGUCGCUG--GGCGCCGCc -3' miRNA: 3'- auuuuuGCA-CAGCGACugCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 54446 | 0.74 | 0.618504 |
Target: 5'- ---uGGCG-GUCGUUagccGCGGCGCCGCa -3' miRNA: 3'- auuuUUGCaCAGCGAc---UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 54003 | 0.66 | 0.956447 |
Target: 5'- --------gGUCGCgcacggccuUGGCGGCGCgCGCg -3' miRNA: 3'- auuuuugcaCAGCG---------ACUGCCGCG-GCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 50538 | 0.68 | 0.922873 |
Target: 5'- aGGAGGCGc--CGCcGGCGGCGCgCGUg -3' miRNA: 3'- aUUUUUGCacaGCGaCUGCCGCG-GCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 50211 | 0.7 | 0.837064 |
Target: 5'- cGAGAACGUGUCaacaaacaGCcguuUGgcGCGGCGCgGCa -3' miRNA: 3'- aUUUUUGCACAG--------CG----AC--UGCCGCGgCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 50022 | 0.69 | 0.898107 |
Target: 5'- ----cGCGUGgUCGCcgGGCGGCGagGCg -3' miRNA: 3'- auuuuUGCAC-AGCGa-CUGCCGCggCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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