miRNA display CGI


Results 121 - 140 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 49747 0.69 0.898107
Target:  5'- -----cCGUaGUCGCUGguGCGGCccaguauguagGCCGCa -3'
miRNA:   3'- auuuuuGCA-CAGCGAC--UGCCG-----------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 49442 0.66 0.970279
Target:  5'- -cGAAACcg--CGCggcugacggugGACGGCGCCGUg -3'
miRNA:   3'- auUUUUGcacaGCGa----------CUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 49400 0.68 0.922873
Target:  5'- gGAGuGCGacaUGUCGCUagaGACGuuuGCGCUGCa -3'
miRNA:   3'- aUUUuUGC---ACAGCGA---CUGC---CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 48808 0.67 0.944033
Target:  5'- uUAAAAA-GUGcuaacaugcuccgcgCGCU-ACGGCGCCGCu -3'
miRNA:   3'- -AUUUUUgCACa--------------GCGAcUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 48780 0.7 0.852852
Target:  5'- ----uGCGUGUuggUGCUGugguccuACGGCaGCCGCg -3'
miRNA:   3'- auuuuUGCACA---GCGAC-------UGCCG-CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 48400 0.68 0.922873
Target:  5'- uUGAAuACGUGUUGCuucaauUGaACGGCaGCgCGCa -3'
miRNA:   3'- -AUUUuUGCACAGCG------AC-UGCCG-CG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 47445 0.67 0.952401
Target:  5'- uUGAAucCGUGuacaUCGgUGAaauUGGUGCCGCa -3'
miRNA:   3'- -AUUUuuGCAC----AGCgACU---GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 46206 0.67 0.938776
Target:  5'- --cGAGCucGUUGagUGGCGGCGCUGCg -3'
miRNA:   3'- auuUUUGcaCAGCg-ACUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 44462 0.72 0.753548
Target:  5'- ----cACGuUGUCGUUGGC-GCGCUGCg -3'
miRNA:   3'- auuuuUGC-ACAGCGACUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 44428 0.7 0.833647
Target:  5'- -uGGGGCG-GUCGUUGAacgcgaucagcaaGGCGCCGUc -3'
miRNA:   3'- auUUUUGCaCAGCGACUg------------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 43735 0.67 0.952401
Target:  5'- uUGGAAACGggcGUUgGCUGGCuuGGCuGCUGCg -3'
miRNA:   3'- -AUUUUUGCa--CAG-CGACUG--CCG-CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 43575 0.67 0.952401
Target:  5'- ---cAGCGUcaUGCUGGCGGCGa-GCg -3'
miRNA:   3'- auuuUUGCAcaGCGACUGCCGCggCG- -5'
6745 3' -52.7 NC_001875.2 + 41707 0.72 0.723294
Target:  5'- -cAGGGCGUaugcgcggCGCUGcGCGGCGUCGCa -3'
miRNA:   3'- auUUUUGCAca------GCGAC-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 41126 0.74 0.618504
Target:  5'- -----uCGUGUCGCgcuUGAcCGGCGgCCGCg -3'
miRNA:   3'- auuuuuGCACAGCG---ACU-GCCGC-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 40411 0.67 0.948109
Target:  5'- --cGGACGUgGUCaacaccgagggGCUGACGcGCGCCa- -3'
miRNA:   3'- auuUUUGCA-CAG-----------CGACUGC-CGCGGcg -5'
6745 3' -52.7 NC_001875.2 + 40266 0.7 0.853661
Target:  5'- cUGAAAACG-GUCGCguuuccguacgUGGCGGCgggcaacggGCUGCa -3'
miRNA:   3'- -AUUUUUGCaCAGCG-----------ACUGCCG---------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 39171 0.66 0.956447
Target:  5'- -cGAGGCGggccggcgGUUGCgUGGCGuuuacgguGCGCCGCu -3'
miRNA:   3'- auUUUUGCa-------CAGCG-ACUGC--------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 38786 0.66 0.960253
Target:  5'- gGAGAGCGcGccCGCaauuCGGCGCUGCa -3'
miRNA:   3'- aUUUUUGCaCa-GCGacu-GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 38554 0.67 0.948109
Target:  5'- -----cCGgGUUGCUGcguCGGCGCgGCg -3'
miRNA:   3'- auuuuuGCaCAGCGACu--GCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 37102 0.74 0.639663
Target:  5'- ----cGCGUGggugUGCgggcGCGGCGCCGCg -3'
miRNA:   3'- auuuuUGCACa---GCGac--UGCCGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.