Results 141 - 160 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 36871 | 0.67 | 0.943568 |
Target: 5'- aAAGAACGUcGUCGUgcgcGCGGCacaCCGCc -3' miRNA: 3'- aUUUUUGCA-CAGCGac--UGCCGc--GGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 36412 | 0.74 | 0.650237 |
Target: 5'- ----cGCGca-CGCUGGcCGGCGCCGCg -3' miRNA: 3'- auuuuUGCacaGCGACU-GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 36087 | 0.72 | 0.734489 |
Target: 5'- -cAAGACGcGcUCGCgcggcagcacgcggcGGCGGCGCCGCu -3' miRNA: 3'- auUUUUGCaC-AGCGa--------------CUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 34161 | 0.69 | 0.884231 |
Target: 5'- -cGAAugGUGgcgcuuuguUCGUUGccguCGGCGUCGCg -3' miRNA: 3'- auUUUugCAC---------AGCGACu---GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 33061 | 0.69 | 0.894047 |
Target: 5'- gGAuAGCGUuccgCGCggcuccagacuuugaUGGCGGCGCCGUc -3' miRNA: 3'- aUUuUUGCAca--GCG---------------ACUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 33030 | 0.68 | 0.917061 |
Target: 5'- --uAAGCGcagCGC-GGCgGGCGCCGCg -3' miRNA: 3'- auuUUUGCacaGCGaCUG-CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 32876 | 0.66 | 0.956447 |
Target: 5'- ---uAGCGU-UCGCUG-CaGCGCUGCa -3' miRNA: 3'- auuuUUGCAcAGCGACuGcCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 32772 | 0.68 | 0.917061 |
Target: 5'- cGAGcGCGUccUCGCgcggcgugGGCgGGCGCCGCg -3' miRNA: 3'- aUUUuUGCAc-AGCGa-------CUG-CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 31589 | 0.66 | 0.973177 |
Target: 5'- aAGGGugGUGUC-----CGGCGCCGUg -3' miRNA: 3'- aUUUUugCACAGcgacuGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 31522 | 0.71 | 0.800625 |
Target: 5'- cGAAGGCGgcggGUCGUUGaACGGCaccacuugcacgcGCUGCa -3' miRNA: 3'- aUUUUUGCa---CAGCGAC-UGCCG-------------CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 31313 | 0.74 | 0.617446 |
Target: 5'- ---cAACcUGUCGCUGGCGGUgcaacaaaaauuuGCCGCc -3' miRNA: 3'- auuuUUGcACAGCGACUGCCG-------------CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 30936 | 0.66 | 0.970279 |
Target: 5'- --cGAGCGUcuccgcgCGCUG-CGGCGCC-Cg -3' miRNA: 3'- auuUUUGCAca-----GCGACuGCCGCGGcG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 29795 | 0.69 | 0.867097 |
Target: 5'- -cGGGACuGUGcgggCGCUGGCGGCGCaugggucaacggcaCGCu -3' miRNA: 3'- auUUUUG-CACa---GCGACUGCCGCG--------------GCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 29070 | 0.75 | 0.597389 |
Target: 5'- --cGGGCGUGUUGCUGccACGGCGCguCGUc -3' miRNA: 3'- auuUUUGCACAGCGAC--UGCCGCG--GCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 26231 | 0.66 | 0.973177 |
Target: 5'- ----cACGUGcaacCGCUcuUGGCGCUGCg -3' miRNA: 3'- auuuuUGCACa---GCGAcuGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 24274 | 0.72 | 0.743564 |
Target: 5'- --cAAGCuUGU-GC-GACGGCGCCGCg -3' miRNA: 3'- auuUUUGcACAgCGaCUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 23802 | 0.77 | 0.45568 |
Target: 5'- ---cGACGUGUCGCUccGCGGCGUCGg -3' miRNA: 3'- auuuUUGCACAGCGAc-UGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 21948 | 0.69 | 0.889898 |
Target: 5'- --uAAACGU-UCGCggcgcggggaugGGCGGCGCCaGCg -3' miRNA: 3'- auuUUUGCAcAGCGa-----------CUGCCGCGG-CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 21081 | 0.69 | 0.884231 |
Target: 5'- aAAAGACG---CGCggcGGCGGuCGCCGCg -3' miRNA: 3'- aUUUUUGCacaGCGa--CUGCC-GCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 19703 | 0.68 | 0.904676 |
Target: 5'- cGAAgcGAgGUGUacgCGCUGugGGCcgagGCCGUa -3' miRNA: 3'- aUUU--UUgCACA---GCGACugCCG----CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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