Results 81 - 100 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 115754 | 0.69 | 0.891291 |
Target: 5'- cUAGcgGCGUG-CGCcaaacCGGCGCCGUg -3' miRNA: 3'- -AUUuuUGCACaGCGacu--GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 96830 | 0.69 | 0.898107 |
Target: 5'- --uGGACGUuaugCGCgccuuguuUGACGGCGCgCGCa -3' miRNA: 3'- auuUUUGCAca--GCG--------ACUGCCGCG-GCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 50022 | 0.69 | 0.898107 |
Target: 5'- ----cGCGUGgUCGCcgGGCGGCGagGCg -3' miRNA: 3'- auuuuUGCAC-AGCGa-CUGCCGCggCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 19703 | 0.68 | 0.904676 |
Target: 5'- cGAAgcGAgGUGUacgCGCUGugGGCcgagGCCGUa -3' miRNA: 3'- aUUU--UUgCACA---GCGACugCCG----CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 75336 | 0.68 | 0.910995 |
Target: 5'- ------gGUGUUGgUGAUGGCGUCGg -3' miRNA: 3'- auuuuugCACAGCgACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 15992 | 0.68 | 0.910995 |
Target: 5'- ---cAACGUGUUGuUUGAcCGGCugcuggGCCGCg -3' miRNA: 3'- auuuUUGCACAGC-GACU-GCCG------CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 19104 | 0.68 | 0.910995 |
Target: 5'- cAGGGcCGUGUUGCUGuGCGcGCGaCGCg -3' miRNA: 3'- aUUUUuGCACAGCGAC-UGC-CGCgGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 72445 | 0.69 | 0.884231 |
Target: 5'- cAAAAugGUGaUUGCgucGACGG-GCUGCa -3' miRNA: 3'- aUUUUugCAC-AGCGa--CUGCCgCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 68565 | 0.69 | 0.884231 |
Target: 5'- ---cGGCGgcgGUCGCgcaccgcgUGGCGCCGCu -3' miRNA: 3'- auuuUUGCa--CAGCGacu-----GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 55334 | 0.69 | 0.876933 |
Target: 5'- gUGAuGACGcGcCGCUucGGgGGCGCCGCc -3' miRNA: 3'- -AUUuUUGCaCaGCGA--CUgCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 114234 | 0.7 | 0.837064 |
Target: 5'- -----uCGUcGUCGCUgGACGcGgGCCGCa -3' miRNA: 3'- auuuuuGCA-CAGCGA-CUGC-CgCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 50211 | 0.7 | 0.837064 |
Target: 5'- cGAGAACGUGUCaacaaacaGCcguuUGgcGCGGCGCgGCa -3' miRNA: 3'- aUUUUUGCACAG--------CG----AC--UGCCGCGgCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 88231 | 0.7 | 0.837064 |
Target: 5'- cAAAAACGg--CGCaagcGGCGcGCGCCGCc -3' miRNA: 3'- aUUUUUGCacaGCGa---CUGC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 65714 | 0.7 | 0.845466 |
Target: 5'- ----cAC-UGUucCGCgGGCGGCGCCGCc -3' miRNA: 3'- auuuuUGcACA--GCGaCUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 11078 | 0.7 | 0.851225 |
Target: 5'- ---uGGCGUGgcgCGCgcccugGAcacggccgccgucuCGGCGCCGCa -3' miRNA: 3'- auuuUUGCACa--GCGa-----CU--------------GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 65768 | 0.7 | 0.853661 |
Target: 5'- -----uCGUG-CGCggcgGGCGGCGgCGCg -3' miRNA: 3'- auuuuuGCACaGCGa---CUGCCGCgGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 40266 | 0.7 | 0.853661 |
Target: 5'- cUGAAAACG-GUCGCguuuccguacgUGGCGGCgggcaacggGCUGCa -3' miRNA: 3'- -AUUUUUGCaCAGCG-----------ACUGCCG---------CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 29795 | 0.69 | 0.867097 |
Target: 5'- -cGGGACuGUGcgggCGCUGGCGGCGCaugggucaacggcaCGCu -3' miRNA: 3'- auUUUUG-CACa---GCGACUGCCGCG--------------GCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 6936 | 0.69 | 0.869401 |
Target: 5'- gUGAGcAACGcGUCGU--GCGuGCGCCGCg -3' miRNA: 3'- -AUUU-UUGCaCAGCGacUGC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 73944 | 0.68 | 0.910995 |
Target: 5'- -----cCGUGUacaaGCUgGACGGCGUCGa -3' miRNA: 3'- auuuuuGCACAg---CGA-CUGCCGCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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