miRNA display CGI


Results 101 - 120 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 29795 0.69 0.867097
Target:  5'- -cGGGACuGUGcgggCGCUGGCGGCGCaugggucaacggcaCGCu -3'
miRNA:   3'- auUUUUG-CACa---GCGACUGCCGCG--------------GCG- -5'
6745 3' -52.7 NC_001875.2 + 6936 0.69 0.869401
Target:  5'- gUGAGcAACGcGUCGU--GCGuGCGCCGCg -3'
miRNA:   3'- -AUUU-UUGCaCAGCGacUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 55334 0.69 0.876933
Target:  5'- gUGAuGACGcGcCGCUucGGgGGCGCCGCc -3'
miRNA:   3'- -AUUuUUGCaCaGCGA--CUgCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 131610 0.73 0.67133
Target:  5'- gAAAAACGUG-CGCaauuUGAUGGCG-CGCg -3'
miRNA:   3'- aUUUUUGCACaGCG----ACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 86911 0.73 0.68183
Target:  5'- cGAAAACGaggCGCUGAa-GCGCCGCc -3'
miRNA:   3'- aUUUUUGCacaGCGACUgcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 7563 0.72 0.723294
Target:  5'- cAAAGGCGgcggGUCGUcGACGaccaacGCGCCGCc -3'
miRNA:   3'- aUUUUUGCa---CAGCGaCUGC------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 74094 0.72 0.723294
Target:  5'- aGGAGGCGUuUCGC-GACuacGCGCCGCg -3'
miRNA:   3'- aUUUUUGCAcAGCGaCUGc--CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 36087 0.72 0.734489
Target:  5'- -cAAGACGcGcUCGCgcggcagcacgcggcGGCGGCGCCGCu -3'
miRNA:   3'- auUUUUGCaC-AGCGa--------------CUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 24274 0.72 0.743564
Target:  5'- --cAAGCuUGU-GC-GACGGCGCCGCg -3'
miRNA:   3'- auuUUUGcACAgCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 44462 0.72 0.753548
Target:  5'- ----cACGuUGUCGUUGGC-GCGCUGCg -3'
miRNA:   3'- auuuuUGC-ACAGCGACUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 57675 0.74 0.659741
Target:  5'- -cAAAACGcGUCcaaGCUGGCggcggcgGGCGCCGCg -3'
miRNA:   3'- auUUUUGCaCAG---CGACUG-------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 113357 0.74 0.650237
Target:  5'- ----cGCGgcugcGUCGCUG-CGGCGCgGCg -3'
miRNA:   3'- auuuuUGCa----CAGCGACuGCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 109015 0.74 0.639663
Target:  5'- -----uCGUGcCGCcGACGGUGCCGUc -3'
miRNA:   3'- auuuuuGCACaGCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 102026 0.74 0.639663
Target:  5'- ---cAGCGUGcCGUUGACccauGCGCCGCc -3'
miRNA:   3'- auuuUUGCACaGCGACUGc---CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 102495 0.74 0.639663
Target:  5'- cGGAAACGgaccacaaGCgGugGGCGCCGCa -3'
miRNA:   3'- aUUUUUGCacag----CGaCugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 41126 0.74 0.618504
Target:  5'- -----uCGUGUCGCgcuUGAcCGGCGgCCGCg -3'
miRNA:   3'- auuuuuGCACAGCG---ACU-GCCGC-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 125621 0.75 0.576383
Target:  5'- --uGGGCGUGUCGCcGACGGaCGCaauuGCg -3'
miRNA:   3'- auuUUUGCACAGCGaCUGCC-GCGg---CG- -5'
6745 3' -52.7 NC_001875.2 + 12654 0.78 0.400591
Target:  5'- aUAAAcAUGcUGUUGUUGACGcGCGCCGCg -3'
miRNA:   3'- -AUUUuUGC-ACAGCGACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 114970 0.86 0.15355
Target:  5'- aUAGAAGCGgucgCGCUGGCGGCGCCGa -3'
miRNA:   3'- -AUUUUUGCaca-GCGACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 104750 0.66 0.973177
Target:  5'- --cGGGCGUGg-GCgu-CGGCGCCGa -3'
miRNA:   3'- auuUUUGCACagCGacuGCCGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.