Results 141 - 160 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 102495 | 0.74 | 0.639663 |
Target: 5'- cGGAAACGgaccacaaGCgGugGGCGCCGCa -3' miRNA: 3'- aUUUUUGCacag----CGaCugCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 41126 | 0.74 | 0.618504 |
Target: 5'- -----uCGUGUCGCgcuUGAcCGGCGgCCGCg -3' miRNA: 3'- auuuuuGCACAGCG---ACU-GCCGC-GGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 125621 | 0.75 | 0.576383 |
Target: 5'- --uGGGCGUGUCGCcGACGGaCGCaauuGCg -3' miRNA: 3'- auuUUUGCACAGCGaCUGCC-GCGg---CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 12654 | 0.78 | 0.400591 |
Target: 5'- aUAAAcAUGcUGUUGUUGACGcGCGCCGCg -3' miRNA: 3'- -AUUUuUGC-ACAGCGACUGC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 114970 | 0.86 | 0.15355 |
Target: 5'- aUAGAAGCGgucgCGCUGGCGGCGCCGa -3' miRNA: 3'- -AUUUUUGCaca-GCGACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 74094 | 0.72 | 0.723294 |
Target: 5'- aGGAGGCGUuUCGC-GACuacGCGCCGCg -3' miRNA: 3'- aUUUUUGCAcAGCGaCUGc--CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 36087 | 0.72 | 0.734489 |
Target: 5'- -cAAGACGcGcUCGCgcggcagcacgcggcGGCGGCGCCGCu -3' miRNA: 3'- auUUUUGCaC-AGCGa--------------CUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 24274 | 0.72 | 0.743564 |
Target: 5'- --cAAGCuUGU-GC-GACGGCGCCGCg -3' miRNA: 3'- auuUUUGcACAgCGaCUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 91228 | 0.7 | 0.837064 |
Target: 5'- gAGGcGCGUGguggCGCccaccACGGCGCCGUa -3' miRNA: 3'- aUUUuUGCACa---GCGac---UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 18752 | 0.7 | 0.837064 |
Target: 5'- ---cGGCGgcuaaggCGCUGACGcGCGUCGCc -3' miRNA: 3'- auuuUUGCaca----GCGACUGC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 65582 | 0.7 | 0.819671 |
Target: 5'- gAAGAGCuUGUCccaGUUGGCGGCGCaguGCg -3' miRNA: 3'- aUUUUUGcACAG---CGACUGCCGCGg--CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 77388 | 0.71 | 0.810696 |
Target: 5'- ----------aCGCUGuGCGGCGCCGCg -3' miRNA: 3'- auuuuugcacaGCGAC-UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 125043 | 0.71 | 0.801549 |
Target: 5'- aUAGAGACaUGUUGCUGuuGGCGaaGCu -3' miRNA: 3'- -AUUUUUGcACAGCGACugCCGCggCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 31522 | 0.71 | 0.800625 |
Target: 5'- cGAAGGCGgcggGUCGUUGaACGGCaccacuugcacgcGCUGCa -3' miRNA: 3'- aUUUUUGCa---CAGCGAC-UGCCG-------------CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 79328 | 0.71 | 0.782772 |
Target: 5'- --uGAGCGcGgCGCUGccuuUGGCGCCGCu -3' miRNA: 3'- auuUUUGCaCaGCGACu---GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 94718 | 0.72 | 0.763417 |
Target: 5'- gAAAGACGcaaaCGCcgGcGCGGCGCCGCg -3' miRNA: 3'- aUUUUUGCaca-GCGa-C-UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 63952 | 0.72 | 0.763417 |
Target: 5'- gGAAGGCGcUGUCGCcGACcGCGCUGa -3' miRNA: 3'- aUUUUUGC-ACAGCGaCUGcCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 89375 | 0.72 | 0.753548 |
Target: 5'- ----cGCGUGUUGCUGcguGGCucGCCGCa -3' miRNA: 3'- auuuuUGCACAGCGACug-CCG--CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 60109 | 0.72 | 0.753548 |
Target: 5'- --uAGACGUGUCGCUcguuuACGcUGCCGCa -3' miRNA: 3'- auuUUUGCACAGCGAc----UGCcGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 44462 | 0.72 | 0.753548 |
Target: 5'- ----cACGuUGUCGUUGGC-GCGCUGCg -3' miRNA: 3'- auuuuUGC-ACAGCGACUGcCGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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