Results 41 - 60 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 96350 | 0.69 | 0.876933 |
Target: 5'- aAAAuACGUcggcucGUUGCUGGCGcacauGCGCUGCa -3' miRNA: 3'- aUUUuUGCA------CAGCGACUGC-----CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 60109 | 0.72 | 0.753548 |
Target: 5'- --uAGACGUGUCGCUcguuuACGcUGCCGCa -3' miRNA: 3'- auuUUUGCACAGCGAc----UGCcGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 12654 | 0.78 | 0.400591 |
Target: 5'- aUAAAcAUGcUGUUGUUGACGcGCGCCGCg -3' miRNA: 3'- -AUUUuUGC-ACAGCGACUGC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 108878 | 0.69 | 0.869401 |
Target: 5'- gGAAAGCGcGgCGgaGGCguacauGGCGCCGCa -3' miRNA: 3'- aUUUUUGCaCaGCgaCUG------CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 114970 | 0.86 | 0.15355 |
Target: 5'- aUAGAAGCGgucgCGCUGGCGGCGCCGa -3' miRNA: 3'- -AUUUUUGCaca-GCGACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 12756 | 0.68 | 0.927885 |
Target: 5'- cGAAAugGguggcgGUUGUUGuccagccGgGGCGCCGCg -3' miRNA: 3'- aUUUUugCa-----CAGCGAC-------UgCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 41126 | 0.74 | 0.618504 |
Target: 5'- -----uCGUGUCGCgcuUGAcCGGCGgCCGCg -3' miRNA: 3'- auuuuuGCACAGCG---ACU-GCCGC-GGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 50538 | 0.68 | 0.922873 |
Target: 5'- aGGAGGCGc--CGCcGGCGGCGCgCGUg -3' miRNA: 3'- aUUUUUGCacaGCGaCUGCCGCG-GCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 18451 | 0.68 | 0.922873 |
Target: 5'- ----cGCGUGgcgCGCgaauCGcGCGCCGCu -3' miRNA: 3'- auuuuUGCACa--GCGacu-GC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 127394 | 0.68 | 0.910995 |
Target: 5'- -cAGAGCcUGgccaaagUGCUGGCGGCGCgCGUc -3' miRNA: 3'- auUUUUGcACa------GCGACUGCCGCG-GCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 66118 | 0.69 | 0.898107 |
Target: 5'- --cGGGCGg--CGa-GGCGGCGCCGCc -3' miRNA: 3'- auuUUUGCacaGCgaCUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 34161 | 0.69 | 0.884231 |
Target: 5'- -cGAAugGUGgcgcuuuguUCGUUGccguCGGCGUCGCg -3' miRNA: 3'- auUUUugCAC---------AGCGACu---GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 6806 | 0.69 | 0.876933 |
Target: 5'- -cAGAuCGgGUCGCUGAaccagcuGCGCCGCg -3' miRNA: 3'- auUUUuGCaCAGCGACUgc-----CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 48780 | 0.7 | 0.852852 |
Target: 5'- ----uGCGUGUuggUGCUGugguccuACGGCaGCCGCg -3' miRNA: 3'- auuuuUGCACA---GCGAC-------UGCCG-CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 18752 | 0.7 | 0.837064 |
Target: 5'- ---cGGCGgcuaaggCGCUGACGcGCGUCGCc -3' miRNA: 3'- auuuUUGCaca----GCGACUGC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 31522 | 0.71 | 0.800625 |
Target: 5'- cGAAGGCGgcggGUCGUUGaACGGCaccacuugcacgcGCUGCa -3' miRNA: 3'- aUUUUUGCa---CAGCGAC-UGCCG-------------CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 63952 | 0.72 | 0.763417 |
Target: 5'- gGAAGGCGcUGUCGCcGACcGCGCUGa -3' miRNA: 3'- aUUUUUGC-ACAGCGaCUGcCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 36087 | 0.72 | 0.734489 |
Target: 5'- -cAAGACGcGcUCGCgcggcagcacgcggcGGCGGCGCCGCu -3' miRNA: 3'- auUUUUGCaC-AGCGa--------------CUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 86911 | 0.73 | 0.68183 |
Target: 5'- cGAAAACGaggCGCUGAa-GCGCCGCc -3' miRNA: 3'- aUUUUUGCacaGCGACUgcCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 109015 | 0.74 | 0.639663 |
Target: 5'- -----uCGUGcCGCcGACGGUGCCGUc -3' miRNA: 3'- auuuuuGCACaGCGaCUGCCGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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