miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 6806 0.69 0.876933
Target:  5'- -cAGAuCGgGUCGCUGAaccagcuGCGCCGCg -3'
miRNA:   3'- auUUUuGCaCAGCGACUgc-----CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 33061 0.69 0.894047
Target:  5'- gGAuAGCGUuccgCGCggcuccagacuuugaUGGCGGCGCCGUc -3'
miRNA:   3'- aUUuUUGCAca--GCG---------------ACUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 102495 0.74 0.639663
Target:  5'- cGGAAACGgaccacaaGCgGugGGCGCCGCa -3'
miRNA:   3'- aUUUUUGCacag----CGaCugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 113357 0.74 0.650237
Target:  5'- ----cGCGgcugcGUCGCUG-CGGCGCgGCg -3'
miRNA:   3'- auuuuUGCa----CAGCGACuGCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 7563 0.72 0.723294
Target:  5'- cAAAGGCGgcggGUCGUcGACGaccaacGCGCCGCc -3'
miRNA:   3'- aUUUUUGCa---CAGCGaCUGC------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 24274 0.72 0.743564
Target:  5'- --cAAGCuUGU-GC-GACGGCGCCGCg -3'
miRNA:   3'- auuUUUGcACAgCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 94718 0.72 0.763417
Target:  5'- gAAAGACGcaaaCGCcgGcGCGGCGCCGCg -3'
miRNA:   3'- aUUUUUGCaca-GCGa-C-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 125043 0.71 0.801549
Target:  5'- aUAGAGACaUGUUGCUGuuGGCGaaGCu -3'
miRNA:   3'- -AUUUUUGcACAGCGACugCCGCggCG- -5'
6745 3' -52.7 NC_001875.2 + 91228 0.7 0.837064
Target:  5'- gAGGcGCGUGguggCGCccaccACGGCGCCGUa -3'
miRNA:   3'- aUUUuUGCACa---GCGac---UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 77085 0.69 0.869401
Target:  5'- -----cUGUuugCGCUGGCGGUGCCGg -3'
miRNA:   3'- auuuuuGCAca-GCGACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 55717 0.66 0.969977
Target:  5'- cAuuGACGUGgCGCUGgaaaaggagcgcuACGGCG-CGCc -3'
miRNA:   3'- aUuuUUGCACaGCGAC-------------UGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 95242 0.66 0.967163
Target:  5'- cAAGGGCGacgCGCagcGGCuGCGCCGCa -3'
miRNA:   3'- aUUUUUGCacaGCGa--CUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 7001 0.68 0.904676
Target:  5'- --uGggUGUGcUGCUGGcCGGCGgCGCg -3'
miRNA:   3'- auuUuuGCACaGCGACU-GCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 118198 0.68 0.917061
Target:  5'- -----uUGUGUUGagcGGCGGCGCgGCa -3'
miRNA:   3'- auuuuuGCACAGCga-CUGCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 50538 0.68 0.922873
Target:  5'- aGGAGGCGc--CGCcGGCGGCGCgCGUg -3'
miRNA:   3'- aUUUUUGCacaGCGaCUGCCGCG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 12756 0.68 0.927885
Target:  5'- cGAAAugGguggcgGUUGUUGuccagccGgGGCGCCGCg -3'
miRNA:   3'- aUUUUugCa-----CAGCGAC-------UgCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 9708 0.67 0.93373
Target:  5'- -----uCGUGcgCGCcGGCcGCGCCGCg -3'
miRNA:   3'- auuuuuGCACa-GCGaCUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 54946 0.67 0.943568
Target:  5'- -cAAAACGUGgUGCuUGuuguaGGCGCCGUc -3'
miRNA:   3'- auUUUUGCACaGCG-ACug---CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 67620 0.66 0.955259
Target:  5'- cUAAGAGCGUG-CGCaagaagcuggaaauUGAacaGGCGCUGg -3'
miRNA:   3'- -AUUUUUGCACaGCG--------------ACUg--CCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 89272 0.66 0.956447
Target:  5'- ----cGCGUG-CGCcGACcuGGCGCgGCu -3'
miRNA:   3'- auuuuUGCACaGCGaCUG--CCGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.