miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 113357 0.74 0.650237
Target:  5'- ----cGCGgcugcGUCGCUG-CGGCGCgGCg -3'
miRNA:   3'- auuuuUGCa----CAGCGACuGCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 102495 0.74 0.639663
Target:  5'- cGGAAACGgaccacaaGCgGugGGCGCCGCa -3'
miRNA:   3'- aUUUUUGCacag----CGaCugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 115588 0.68 0.922873
Target:  5'- ----cACGUGacgcacgCGCgUGACGGCcucgucGCCGCa -3'
miRNA:   3'- auuuuUGCACa------GCG-ACUGCCG------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 48400 0.68 0.922873
Target:  5'- uUGAAuACGUGUUGCuucaauUGaACGGCaGCgCGCa -3'
miRNA:   3'- -AUUUuUGCACAGCG------AC-UGCCG-CG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 106099 0.68 0.928429
Target:  5'- cGAAGACGUGUUGCgUGuGCuuCGCUGCa -3'
miRNA:   3'- aUUUUUGCACAGCG-AC-UGccGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 77085 0.69 0.869401
Target:  5'- -----cUGUuugCGCUGGCGGUGCCGg -3'
miRNA:   3'- auuuuuGCAca-GCGACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 110888 0.68 0.922873
Target:  5'- ----cGCGUuugCGCUgGACGGC-CCGCg -3'
miRNA:   3'- auuuuUGCAca-GCGA-CUGCCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 88231 0.7 0.837064
Target:  5'- cAAAAACGg--CGCaagcGGCGcGCGCCGCc -3'
miRNA:   3'- aUUUUUGCacaGCGa---CUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 125058 0.68 0.928429
Target:  5'- ----uGCGgGUCGCUGAUGcccugaaacaCGCCGCg -3'
miRNA:   3'- auuuuUGCaCAGCGACUGCc---------GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 5971 0.67 0.93373
Target:  5'- --uGAAUGUgGUCGCcGACGGCagGCCcaGCg -3'
miRNA:   3'- auuUUUGCA-CAGCGaCUGCCG--CGG--CG- -5'
6745 3' -52.7 NC_001875.2 + 17468 0.67 0.938776
Target:  5'- cGAGAugcACgGUGUUauggccagcaaGUUGGCGGaCGCCGCg -3'
miRNA:   3'- aUUUU---UG-CACAG-----------CGACUGCC-GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 50211 0.7 0.837064
Target:  5'- cGAGAACGUGUCaacaaacaGCcguuUGgcGCGGCGCgGCa -3'
miRNA:   3'- aUUUUUGCACAG--------CG----AC--UGCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 114234 0.7 0.837064
Target:  5'- -----uCGUcGUCGCUgGACGcGgGCCGCa -3'
miRNA:   3'- auuuuuGCA-CAGCGA-CUGC-CgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 65714 0.7 0.845466
Target:  5'- ----cAC-UGUucCGCgGGCGGCGCCGCc -3'
miRNA:   3'- auuuuUGcACA--GCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 129139 0.67 0.943568
Target:  5'- -uGGAGCagGUGaUGCUGGagucugccgaGGCGCCGCa -3'
miRNA:   3'- auUUUUG--CACaGCGACUg---------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 111964 0.67 0.938776
Target:  5'- ----cGCGUuUCGCaaACGGCGcCCGCg -3'
miRNA:   3'- auuuuUGCAcAGCGacUGCCGC-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 109873 0.67 0.938776
Target:  5'- --cAAGC-UGgCGCUGGCGccgcccauccccGCGCCGCa -3'
miRNA:   3'- auuUUUGcACaGCGACUGC------------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 46206 0.67 0.938776
Target:  5'- --cGAGCucGUUGagUGGCGGCGCUGCg -3'
miRNA:   3'- auuUUUGcaCAGCg-ACUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 41707 0.72 0.723294
Target:  5'- -cAGGGCGUaugcgcggCGCUGcGCGGCGUCGCa -3'
miRNA:   3'- auUUUUGCAca------GCGAC-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 100057 0.73 0.692287
Target:  5'- -----uUGUGgaGCUGACGGUGCUGCu -3'
miRNA:   3'- auuuuuGCACagCGACUGCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.