miRNA display CGI


Results 101 - 120 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 31313 0.74 0.617446
Target:  5'- ---cAACcUGUCGCUGGCGGUgcaacaaaaauuuGCCGCc -3'
miRNA:   3'- auuuUUGcACAGCGACUGCCG-------------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 129139 0.67 0.943568
Target:  5'- -uGGAGCagGUGaUGCUGGagucugccgaGGCGCCGCa -3'
miRNA:   3'- auUUUUG--CACaGCGACUg---------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 119056 0.66 0.973177
Target:  5'- ---cGGCGUG-CGCaUGugcGCGGCGCCccgGCu -3'
miRNA:   3'- auuuUUGCACaGCG-AC---UGCCGCGG---CG- -5'
6745 3' -52.7 NC_001875.2 + 99384 0.66 0.973177
Target:  5'- -cAAAGCGc--CGCaccGGCGGCGCCaGCg -3'
miRNA:   3'- auUUUUGCacaGCGa--CUGCCGCGG-CG- -5'
6745 3' -52.7 NC_001875.2 + 65714 0.7 0.845466
Target:  5'- ----cAC-UGUucCGCgGGCGGCGCCGCc -3'
miRNA:   3'- auuuuUGcACA--GCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 88231 0.7 0.837064
Target:  5'- cAAAAACGg--CGCaagcGGCGcGCGCCGCc -3'
miRNA:   3'- aUUUUUGCacaGCGa---CUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 50211 0.7 0.837064
Target:  5'- cGAGAACGUGUCaacaaacaGCcguuUGgcGCGGCGCgGCa -3'
miRNA:   3'- aUUUUUGCACAG--------CG----AC--UGCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 109873 0.67 0.938776
Target:  5'- --cAAGC-UGgCGCUGGCGccgcccauccccGCGCCGCa -3'
miRNA:   3'- auuUUUGcACaGCGACUGC------------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 5720 0.7 0.837064
Target:  5'- cUAAGAACcgaacaaaGUgGUCGUUGAUGGCGaCGCg -3'
miRNA:   3'- -AUUUUUG--------CA-CAGCGACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 110646 0.7 0.837064
Target:  5'- ------gGUGgCGCUGGCcGUGCCGCg -3'
miRNA:   3'- auuuuugCACaGCGACUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 44428 0.7 0.833647
Target:  5'- -uGGGGCG-GUCGUUGAacgcgaucagcaaGGCGCCGUc -3'
miRNA:   3'- auUUUUGCaCAGCGACUg------------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 80285 0.68 0.910995
Target:  5'- --uGAACGgcUCGCacuUGACGaGCGCCGUc -3'
miRNA:   3'- auuUUUGCacAGCG---ACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 15992 0.68 0.910995
Target:  5'- ---cAACGUGUUGuUUGAcCGGCugcuggGCCGCg -3'
miRNA:   3'- auuuUUGCACAGC-GACU-GCCG------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 114234 0.7 0.837064
Target:  5'- -----uCGUcGUCGCUgGACGcGgGCCGCa -3'
miRNA:   3'- auuuuuGCA-CAGCGA-CUGC-CgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 19104 0.68 0.910995
Target:  5'- cAGGGcCGUGUUGCUGuGCGcGCGaCGCg -3'
miRNA:   3'- aUUUUuGCACAGCGAC-UGC-CGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 5068 0.66 0.970279
Target:  5'- gGAAAACGUcGUCGCgcacgucGACcaccuaauGGgGCUGCg -3'
miRNA:   3'- aUUUUUGCA-CAGCGa------CUG--------CCgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 75296 0.66 0.970279
Target:  5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 75446 0.66 0.970279
Target:  5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 31589 0.66 0.973177
Target:  5'- aAGGGugGUGUC-----CGGCGCCGUg -3'
miRNA:   3'- aUUUUugCACAGcgacuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 130341 0.66 0.973177
Target:  5'- aAAAGGCaggGUcGUCGCUGAC-GCaCCGCu -3'
miRNA:   3'- aUUUUUG---CA-CAGCGACUGcCGcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.