miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 5' -48.2 NC_001875.2 + 67344 0.66 0.999144
Target:  5'- aGCGaCGagGAGUcGGgCGGCAACAa- -3'
miRNA:   3'- gCGC-GCaaUUCAuUCaGCCGUUGUac -5'
6746 5' -48.2 NC_001875.2 + 111125 0.66 0.999144
Target:  5'- uGCGUGUUGucgcuaacGUAcGUUGGCGGCGg- -3'
miRNA:   3'- gCGCGCAAUu-------CAUuCAGCCGUUGUac -5'
6746 5' -48.2 NC_001875.2 + 57237 0.66 0.999144
Target:  5'- gGCGCGau--GUuGGUCGuCAGCGUGg -3'
miRNA:   3'- gCGCGCaauuCAuUCAGCcGUUGUAC- -5'
6746 5' -48.2 NC_001875.2 + 31866 0.66 0.999108
Target:  5'- uCGCGCGUggacuggcgccGGUugcAAGUUGGCGACc-- -3'
miRNA:   3'- -GCGCGCAau---------UCA---UUCAGCCGUUGuac -5'
6746 5' -48.2 NC_001875.2 + 113580 0.66 0.999031
Target:  5'- gGCGCGccaUUGGGccagcacggcguucGAGUCGGCGGCGg- -3'
miRNA:   3'- gCGCGC---AAUUCa-------------UUCAGCCGUUGUac -5'
6746 5' -48.2 NC_001875.2 + 57624 0.66 0.998948
Target:  5'- gGCGCGauguuGUGauGGUCGGCAAgGg- -3'
miRNA:   3'- gCGCGCaauu-CAU--UCAGCCGUUgUac -5'
6746 5' -48.2 NC_001875.2 + 43317 0.66 0.998948
Target:  5'- gCGCGCGc---GcGGGUCGGCGugGUu -3'
miRNA:   3'- -GCGCGCaauuCaUUCAGCCGUugUAc -5'
6746 5' -48.2 NC_001875.2 + 11926 0.66 0.998714
Target:  5'- aGCGUGUUcugcacccagGGGUugAGGUCGcGCAGCGa- -3'
miRNA:   3'- gCGCGCAA----------UUCA--UUCAGC-CGUUGUac -5'
6746 5' -48.2 NC_001875.2 + 31901 0.66 0.998438
Target:  5'- aGCGCGUUGgcaaAGUAcauGG-CGuGCAGCAUc -3'
miRNA:   3'- gCGCGCAAU----UCAU---UCaGC-CGUUGUAc -5'
6746 5' -48.2 NC_001875.2 + 37416 0.66 0.998438
Target:  5'- gGCGCGUggaaGAGgccguggcgcAGUCGGCGGCc-- -3'
miRNA:   3'- gCGCGCAa---UUCau--------UCAGCCGUUGuac -5'
6746 5' -48.2 NC_001875.2 + 57311 0.67 0.997734
Target:  5'- gCGCGCGUc------GUCGGCGACGc- -3'
miRNA:   3'- -GCGCGCAauucauuCAGCCGUUGUac -5'
6746 5' -48.2 NC_001875.2 + 94506 0.67 0.997292
Target:  5'- cCGCGCGcaAAGUccacaAAGUaCGGCAGCc-- -3'
miRNA:   3'- -GCGCGCaaUUCA-----UUCA-GCCGUUGuac -5'
6746 5' -48.2 NC_001875.2 + 10144 0.67 0.996782
Target:  5'- gGCGUGUUccGcAAGcgCGGCGugGUGg -3'
miRNA:   3'- gCGCGCAAuuCaUUCa-GCCGUugUAC- -5'
6746 5' -48.2 NC_001875.2 + 84418 0.67 0.996727
Target:  5'- gGCGCGUaUAGGUGccaucggcggaucGGgagCGGCGGCGg- -3'
miRNA:   3'- gCGCGCA-AUUCAU-------------UCa--GCCGUUGUac -5'
6746 5' -48.2 NC_001875.2 + 39653 0.67 0.996194
Target:  5'- cCGCGCGc-GAGUuuGGGcCGGCGGCGc- -3'
miRNA:   3'- -GCGCGCaaUUCA--UUCaGCCGUUGUac -5'
6746 5' -48.2 NC_001875.2 + 24052 0.68 0.994753
Target:  5'- aCGCGCGUUAccggcgucuGGUucGUuuugggCGGCGGCGUu -3'
miRNA:   3'- -GCGCGCAAU---------UCAuuCA------GCCGUUGUAc -5'
6746 5' -48.2 NC_001875.2 + 36147 0.68 0.994671
Target:  5'- aCGCGCGUUugcAGcAAGUgGGCcagcuuaAGCAUGu -3'
miRNA:   3'- -GCGCGCAAu--UCaUUCAgCCG-------UUGUAC- -5'
6746 5' -48.2 NC_001875.2 + 119533 0.68 0.994244
Target:  5'- gGCGCGUUGAccacgcacaCGGCGGCGUGc -3'
miRNA:   3'- gCGCGCAAUUcauuca---GCCGUUGUAC- -5'
6746 5' -48.2 NC_001875.2 + 110741 0.68 0.9929
Target:  5'- gGCGCGUgcAGUuuAAGcgCGGCGACc-- -3'
miRNA:   3'- gCGCGCAauUCA--UUCa-GCCGUUGuac -5'
6746 5' -48.2 NC_001875.2 + 74976 0.68 0.991796
Target:  5'- aGUGUGUUGAGUGGGUagaaggGGCAGuCAg- -3'
miRNA:   3'- gCGCGCAAUUCAUUCAg-----CCGUU-GUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.