miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 5' -48.2 NC_001875.2 + 21043 0.73 0.923923
Target:  5'- uGCGCGgcguuGUAuccguGGUCGGCGGCGUu -3'
miRNA:   3'- gCGCGCaauu-CAU-----UCAGCCGUUGUAc -5'
6746 5' -48.2 NC_001875.2 + 5549 0.74 0.884209
Target:  5'- gCGCGCGUUAAGgugccAGUcaCGGCGACuGUGc -3'
miRNA:   3'- -GCGCGCAAUUCau---UCA--GCCGUUG-UAC- -5'
6746 5' -48.2 NC_001875.2 + 107805 1.11 0.01091
Target:  5'- aCGCGCGUUAAGUAAGUCGGCAACAUGa -3'
miRNA:   3'- -GCGCGCAAUUCAUUCAGCCGUUGUAC- -5'
6746 5' -48.2 NC_001875.2 + 11926 0.66 0.998714
Target:  5'- aGCGUGUUcugcacccagGGGUugAGGUCGcGCAGCGa- -3'
miRNA:   3'- gCGCGCAA----------UUCA--UUCAGC-CGUUGUac -5'
6746 5' -48.2 NC_001875.2 + 94506 0.67 0.997292
Target:  5'- cCGCGCGcaAAGUccacaAAGUaCGGCAGCc-- -3'
miRNA:   3'- -GCGCGCaaUUCA-----UUCA-GCCGUUGuac -5'
6746 5' -48.2 NC_001875.2 + 119533 0.68 0.994244
Target:  5'- gGCGCGUUGAccacgcacaCGGCGGCGUGc -3'
miRNA:   3'- gCGCGCAAUUcauuca---GCCGUUGUAC- -5'
6746 5' -48.2 NC_001875.2 + 111125 0.66 0.999144
Target:  5'- uGCGUGUUGucgcuaacGUAcGUUGGCGGCGg- -3'
miRNA:   3'- gCGCGCAAUu-------CAUuCAGCCGUUGUac -5'
6746 5' -48.2 NC_001875.2 + 67344 0.66 0.999144
Target:  5'- aGCGaCGagGAGUcGGgCGGCAACAa- -3'
miRNA:   3'- gCGC-GCaaUUCAuUCaGCCGUUGUac -5'
6746 5' -48.2 NC_001875.2 + 31901 0.66 0.998438
Target:  5'- aGCGCGUUGgcaaAGUAcauGG-CGuGCAGCAUc -3'
miRNA:   3'- gCGCGCAAU----UCAU---UCaGC-CGUUGUAc -5'
6746 5' -48.2 NC_001875.2 + 3163 0.7 0.977366
Target:  5'- uCGgGCGgcgagUAGGUGAGcCGGCGGCc-- -3'
miRNA:   3'- -GCgCGCa----AUUCAUUCaGCCGUUGuac -5'
6746 5' -48.2 NC_001875.2 + 33571 0.71 0.956825
Target:  5'- cCGCGgGgcaccaugcccGAGUCGGCGACGUGg -3'
miRNA:   3'- -GCGCgCaauuca-----UUCAGCCGUUGUAC- -5'
6746 5' -48.2 NC_001875.2 + 93197 0.7 0.974716
Target:  5'- aCGCG-GUacGGcGAGUCGGCGGCGUu -3'
miRNA:   3'- -GCGCgCAauUCaUUCAGCCGUUGUAc -5'
6746 5' -48.2 NC_001875.2 + 57624 0.66 0.998948
Target:  5'- gGCGCGauguuGUGauGGUCGGCAAgGg- -3'
miRNA:   3'- gCGCGCaauu-CAU--UCAGCCGUUgUac -5'
6746 5' -48.2 NC_001875.2 + 124728 0.74 0.884209
Target:  5'- gGCGCGUggcGGUcaauGUCGGCAGCGc- -3'
miRNA:   3'- gCGCGCAau-UCAuu--CAGCCGUUGUac -5'
6746 5' -48.2 NC_001875.2 + 43317 0.66 0.998948
Target:  5'- gCGCGCGc---GcGGGUCGGCGugGUu -3'
miRNA:   3'- -GCGCGCaauuCaUUCAGCCGUugUAc -5'
6746 5' -48.2 NC_001875.2 + 37416 0.66 0.998438
Target:  5'- gGCGCGUggaaGAGgccguggcgcAGUCGGCGGCc-- -3'
miRNA:   3'- gCGCGCAa---UUCau--------UCAGCCGUUGuac -5'
6746 5' -48.2 NC_001875.2 + 57311 0.67 0.997734
Target:  5'- gCGCGCGUc------GUCGGCGACGc- -3'
miRNA:   3'- -GCGCGCAauucauuCAGCCGUUGUac -5'
6746 5' -48.2 NC_001875.2 + 10144 0.67 0.996782
Target:  5'- gGCGUGUUccGcAAGcgCGGCGugGUGg -3'
miRNA:   3'- gCGCGCAAuuCaUUCa-GCCGUugUAC- -5'
6746 5' -48.2 NC_001875.2 + 77015 0.7 0.979806
Target:  5'- gGCGCGUUugAGGUGuucgGGcUCGGCAGCc-- -3'
miRNA:   3'- gCGCGCAA--UUCAU----UC-AGCCGUUGuac -5'
6746 5' -48.2 NC_001875.2 + 110741 0.68 0.9929
Target:  5'- gGCGCGUgcAGUuuAAGcgCGGCGACc-- -3'
miRNA:   3'- gCGCGCAauUCA--UUCa-GCCGUUGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.