Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6747 | 5' | -53.5 | NC_001875.2 | + | 121413 | 0.68 | 0.866563 |
Target: 5'- aGCUgCuGCGCCAaauGUUGGGUAGuGCAGc -3' miRNA: 3'- -CGA-GuCGCGGUgu-CAACCCGUU-UGUU- -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 38768 | 0.68 | 0.87429 |
Target: 5'- -gUCGGCGUC-CuGUUGGGCGGAgAGc -3' miRNA: 3'- cgAGUCGCGGuGuCAACCCGUUUgUU- -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 93473 | 0.67 | 0.881779 |
Target: 5'- -gUCAGCGCCggguggcaacACAcUUGGcGCAAGCGAc -3' miRNA: 3'- cgAGUCGCGG----------UGUcAACC-CGUUUGUU- -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 79846 | 0.67 | 0.889023 |
Target: 5'- uGCUCAGCugGCUAauGUUGGGguGGCGc -3' miRNA: 3'- -CGAGUCG--CGGUguCAACCCguUUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 30493 | 0.67 | 0.902761 |
Target: 5'- aCUCGGCGUC-CAGUUuGGCG-ACAAa -3' miRNA: 3'- cGAGUCGCGGuGUCAAcCCGUuUGUU- -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 2844 | 0.67 | 0.902761 |
Target: 5'- aGCUgGGCGaauaguuuaACAGggUGGGCGAGCGc -3' miRNA: 3'- -CGAgUCGCgg-------UGUCa-ACCCGUUUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 59341 | 0.67 | 0.902761 |
Target: 5'- gGCUgCAGUGCCACAuuugcugcucGgUGGGCGAAauCAAa -3' miRNA: 3'- -CGA-GUCGCGGUGU----------CaACCCGUUU--GUU- -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 125964 | 0.66 | 0.915472 |
Target: 5'- gGUUCGGCGCauCGGcgaGGGCAAACGc -3' miRNA: 3'- -CGAGUCGCGguGUCaa-CCCGUUUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 86096 | 0.66 | 0.915472 |
Target: 5'- gGCUCGGCGCCGC-GUUuacGGCuucGCGu -3' miRNA: 3'- -CGAGUCGCGGUGuCAAc--CCGuu-UGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 51937 | 0.66 | 0.915472 |
Target: 5'- aGCgugCGGCGCUACu-UUGGGCGcGACGu -3' miRNA: 3'- -CGa--GUCGCGGUGucAACCCGU-UUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 57580 | 0.66 | 0.917889 |
Target: 5'- gGCgCGGCGUCGCgcuguccagaagcguGGUguaGGGCAGGCAc -3' miRNA: 3'- -CGaGUCGCGGUG---------------UCAa--CCCGUUUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 3877 | 0.66 | 0.927138 |
Target: 5'- aGCaCcGCGCCGCcaAGcUGGGCAGGCu- -3' miRNA: 3'- -CGaGuCGCGGUG--UCaACCCGUUUGuu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 119237 | 0.66 | 0.937752 |
Target: 5'- ---uGGCGCCAacauCAGUUGGGUcuACGc -3' miRNA: 3'- cgagUCGCGGU----GUCAACCCGuuUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 22871 | 0.66 | 0.939749 |
Target: 5'- uGCgucCAGCaGCUugucggccaauucuuGCAGUUGGGCGGAUu- -3' miRNA: 3'- -CGa--GUCG-CGG---------------UGUCAACCCGUUUGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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