Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6748 | 3' | -55.9 | NC_001875.2 | + | 6677 | 0.66 | 0.857746 |
Target: 5'- aACGGCCGCUuCGAGccgggcuacaacCUGUCCAaCAAc -3' miRNA: 3'- -UGCCGGUGGuGCUCa-----------GACAGGU-GUUu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 7070 | 0.67 | 0.817564 |
Target: 5'- uGCGGCgaCGCCACcGGcCUGUgCGCAGAc -3' miRNA: 3'- -UGCCG--GUGGUGcUCaGACAgGUGUUU- -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 10697 | 0.66 | 0.864757 |
Target: 5'- aACGGCUggacgccccGCUcgaacgccgacucaACGAGUCUGUCgACGGGg -3' miRNA: 3'- -UGCCGG---------UGG--------------UGCUCAGACAGgUGUUU- -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 13538 | 0.66 | 0.84321 |
Target: 5'- cCGGCCGCCuCGAccCUGUCgGCGu- -3' miRNA: 3'- uGCCGGUGGuGCUcaGACAGgUGUuu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 34911 | 0.66 | 0.859319 |
Target: 5'- gUGGCCGCCGCG-GUCg--CCAaCAAc -3' miRNA: 3'- uGCCGGUGGUGCuCAGacaGGU-GUUu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 43913 | 0.68 | 0.761771 |
Target: 5'- gGCGGUCaugaGCUugGAGUCgcgcaccagcGUCCACAAc -3' miRNA: 3'- -UGCCGG----UGGugCUCAGa---------CAGGUGUUu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 44111 | 0.66 | 0.881861 |
Target: 5'- -aGGUgGCgGCGAG-UUGUCCGCGGu -3' miRNA: 3'- ugCCGgUGgUGCUCaGACAGGUGUUu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 46016 | 0.68 | 0.751996 |
Target: 5'- uCGGCCGcCCACGcAG-CUGgccgCCGCGGAa -3' miRNA: 3'- uGCCGGU-GGUGC-UCaGACa---GGUGUUU- -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 46487 | 0.66 | 0.851368 |
Target: 5'- cGCGaacGCCGCCACGGcGUCggcGUUCGCGGc -3' miRNA: 3'- -UGC---CGGUGGUGCU-CAGa--CAGGUGUUu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 62834 | 0.66 | 0.851368 |
Target: 5'- aGCGcGCCACCACGuGcUUGcccccgcggcacUCCACAAAc -3' miRNA: 3'- -UGC-CGGUGGUGCuCaGAC------------AGGUGUUU- -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 63453 | 0.73 | 0.495887 |
Target: 5'- gGCGGCCAgCCGCGAGgcgUUGguuuccagCCACAAu -3' miRNA: 3'- -UGCCGGU-GGUGCUCa--GACa-------GGUGUUu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 65670 | 0.72 | 0.505747 |
Target: 5'- cGCGGCUAgCCAUGAGUUUGUaUCGCAGc -3' miRNA: 3'- -UGCCGGU-GGUGCUCAGACA-GGUGUUu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 67359 | 0.66 | 0.851368 |
Target: 5'- gGCGGCaacaACCGCGAcUC-GUCCACc-- -3' miRNA: 3'- -UGCCGg---UGGUGCUcAGaCAGGUGuuu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 77279 | 0.66 | 0.859319 |
Target: 5'- aGCGGCCGCCGCGgcgcAGUacaUGUUUcaGCAGu -3' miRNA: 3'- -UGCCGGUGGUGC----UCAg--ACAGG--UGUUu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 77640 | 0.68 | 0.761771 |
Target: 5'- gACGGCCugCACGuguGUCUGguggacgCCAa--- -3' miRNA: 3'- -UGCCGGugGUGCu--CAGACa------GGUguuu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 84648 | 0.68 | 0.771426 |
Target: 5'- uUGGCCACCGCGuAGUUU-UCCAUGGu -3' miRNA: 3'- uGCCGGUGGUGC-UCAGAcAGGUGUUu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 96061 | 0.69 | 0.711893 |
Target: 5'- uGCGcGCCAUCACGGGUCaaaagGUgCACGu- -3' miRNA: 3'- -UGC-CGGUGGUGCUCAGa----CAgGUGUuu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 102397 | 0.66 | 0.867055 |
Target: 5'- cAUGGCCGCCAgCGGGUUcuacuacuUGggCCGCGGc -3' miRNA: 3'- -UGCCGGUGGU-GCUCAG--------ACa-GGUGUUu -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 103951 | 0.67 | 0.7866 |
Target: 5'- gGCGGCCugUugcacacggcauuCGAGUCUG-CCAUGGAa -3' miRNA: 3'- -UGCCGGugGu------------GCUCAGACaGGUGUUU- -5' |
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6748 | 3' | -55.9 | NC_001875.2 | + | 105850 | 0.92 | 0.031275 |
Target: 5'- gACGGCCACCACGAGUCUGcUCACAAAc -3' miRNA: 3'- -UGCCGGUGGUGCUCAGACaGGUGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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