miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 3' -50.6 NC_001875.2 + 68771 0.68 0.968292
Target:  5'- cGAggUUGCGgaACCGCGcAGGUCGUUc- -3'
miRNA:   3'- cUUuuGAUGC--UGGCGC-UCCGGCAAaa -5'
6749 3' -50.6 NC_001875.2 + 30183 0.68 0.968292
Target:  5'- uGAAAGCcgugauuugGCGccguucGCCGCGAcGGCCGUUg- -3'
miRNA:   3'- -CUUUUGa--------UGC------UGGCGCU-CCGGCAAaa -5'
6749 3' -50.6 NC_001875.2 + 19708 0.68 0.968292
Target:  5'- cGAGGugUACGcGCUGUgggccGAGGCCGUa-- -3'
miRNA:   3'- -CUUUugAUGC-UGGCG-----CUCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 34893 0.68 0.968292
Target:  5'- aAGGACUACGAgCGCGAGaucaaggcgcGCCaGUUUUu -3'
miRNA:   3'- cUUUUGAUGCUgGCGCUC----------CGG-CAAAA- -5'
6749 3' -50.6 NC_001875.2 + 23170 0.68 0.964957
Target:  5'- -cGGGCacgGCGGCUGCGGgcacGGCCGUUg- -3'
miRNA:   3'- cuUUUGa--UGCUGGCGCU----CCGGCAAaa -5'
6749 3' -50.6 NC_001875.2 + 54566 0.68 0.961384
Target:  5'- ---uACUGCG-CCGCGGcGGCCGc--- -3'
miRNA:   3'- cuuuUGAUGCuGGCGCU-CCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 19857 0.68 0.957565
Target:  5'- cAAGACU-CGGCCGCGucgcggcgcgGGcGCCGUUUg -3'
miRNA:   3'- cUUUUGAuGCUGGCGC----------UC-CGGCAAAa -5'
6749 3' -50.6 NC_001875.2 + 40998 0.68 0.953497
Target:  5'- uGAAcAACgucaACGGCCGCGuGGUCGUg-- -3'
miRNA:   3'- -CUU-UUGa---UGCUGGCGCuCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 101145 0.68 0.953497
Target:  5'- cGAAAACgauuuCGACCaCGuGGCCGUg-- -3'
miRNA:   3'- -CUUUUGau---GCUGGcGCuCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 120739 0.69 0.934636
Target:  5'- --cAGCUGCGgcGCCGagaCGGGGCCGUg-- -3'
miRNA:   3'- cuuUUGAUGC--UGGC---GCUCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 89502 0.69 0.934636
Target:  5'- ---cGCUGCGACUGCGcuuccgccugGGGCCGc--- -3'
miRNA:   3'- cuuuUGAUGCUGGCGC----------UCCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 9630 0.69 0.934636
Target:  5'- -uAAGCUGCGugCGCGc-GCCGUg-- -3'
miRNA:   3'- cuUUUGAUGCugGCGCucCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 104123 0.69 0.92926
Target:  5'- aGGAucuACUGCGcGCCGUGGGGCCc---- -3'
miRNA:   3'- -CUUu--UGAUGC-UGGCGCUCCGGcaaaa -5'
6749 3' -50.6 NC_001875.2 + 14723 0.69 0.92926
Target:  5'- --uGACaACGAgCGCGAGGCCa---- -3'
miRNA:   3'- cuuUUGaUGCUgGCGCUCCGGcaaaa -5'
6749 3' -50.6 NC_001875.2 + 16008 0.7 0.923617
Target:  5'- --cGGCUGCugGGCCGCGAGGUCa---- -3'
miRNA:   3'- cuuUUGAUG--CUGGCGCUCCGGcaaaa -5'
6749 3' -50.6 NC_001875.2 + 99134 0.7 0.905092
Target:  5'- aGAAAuCUACGACCGgGAGGaCGg--- -3'
miRNA:   3'- -CUUUuGAUGCUGGCgCUCCgGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 99158 0.7 0.905092
Target:  5'- aGAAAuCUACGACCGgGAGGaCGg--- -3'
miRNA:   3'- -CUUUuGAUGCUGGCgCUCCgGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 129337 0.7 0.905092
Target:  5'- cGAcAACUacGCGGCCGCauGAcGGCCGUUa- -3'
miRNA:   3'- -CUuUUGA--UGCUGGCG--CU-CCGGCAAaa -5'
6749 3' -50.6 NC_001875.2 + 16238 0.7 0.89839
Target:  5'- --uGACUGCGG-CGaCGAGGCCGUc-- -3'
miRNA:   3'- cuuUUGAUGCUgGC-GCUCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 128004 0.73 0.789911
Target:  5'- uGGAGGCUGCGGCCGCGccGgCGUg-- -3'
miRNA:   3'- -CUUUUGAUGCUGGCGCucCgGCAaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.