miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
675 3' -57.2 AC_000018.1 + 21628 0.72 0.201606
Target:  5'- uAGUcaACACUgCCGGACGCGaGAcgGGGg -3'
miRNA:   3'- cUCG--UGUGGgGGCUUGCGC-CUuaCCC- -5'
675 3' -57.2 AC_000018.1 + 5064 0.68 0.372443
Target:  5'- cAGCAgACCUCCucguuuCGCGGGuUGGGa -3'
miRNA:   3'- cUCGUgUGGGGGcuu---GCGCCUuACCC- -5'
675 3' -57.2 AC_000018.1 + 22056 0.67 0.457733
Target:  5'- uAGCGC-CUCCUGGuugcgGCGCaGggUGGGc -3'
miRNA:   3'- cUCGUGuGGGGGCU-----UGCGcCuuACCC- -5'
675 3' -57.2 AC_000018.1 + 28189 0.67 0.447737
Target:  5'- gGAGCuCACCUCCGGuuuUG-GGAGUGGu -3'
miRNA:   3'- -CUCGuGUGGGGGCUu--GCgCCUUACCc -5'
675 3' -57.2 AC_000018.1 + 17301 0.67 0.428115
Target:  5'- uAGCGaguGCCUCUGuAACcCGGAGUGGGa -3'
miRNA:   3'- cUCGUg--UGGGGGC-UUGcGCCUUACCC- -5'
675 3' -57.2 AC_000018.1 + 18492 0.75 0.140879
Target:  5'- cGGGCGCgguguGCCCCCaGGACGCGGucUGGc -3'
miRNA:   3'- -CUCGUG-----UGGGGG-CUUGCGCCuuACCc -5'
675 3' -57.2 AC_000018.1 + 15957 0.75 0.133173
Target:  5'- uGAGUGCGCCCCaggGAGCGCGGAAa--- -3'
miRNA:   3'- -CUCGUGUGGGGg--CUUGCGCCUUaccc -5'
675 3' -57.2 AC_000018.1 + 23748 1.09 0.0004
Target:  5'- gGAGCACACCCCCGAACGCGGAAUGGGc -3'
miRNA:   3'- -CUCGUGUGGGGGCUUGCGCCUUACCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.