miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6752 5' -50.2 NC_001875.2 + 69103 0.66 0.990323
Target:  5'- aGGCGGCUUgcaaucUUGcCGUUGCACAc -3'
miRNA:   3'- -UUGCCGGAacaaa-AACaGCGACGUGU- -5'
6752 5' -50.2 NC_001875.2 + 72302 0.66 0.990323
Target:  5'- --gGGCCcgaUUUUUGcUGCUGCACAa -3'
miRNA:   3'- uugCCGGaacAAAAACaGCGACGUGU- -5'
6752 5' -50.2 NC_001875.2 + 113563 0.66 0.987339
Target:  5'- aAGCGGCCUUGUgcgaccgcgUGUCGacgGUaaACAa -3'
miRNA:   3'- -UUGCCGGAACAaaa------ACAGCga-CG--UGU- -5'
6752 5' -50.2 NC_001875.2 + 82204 0.66 0.987339
Target:  5'- cGGCGGCCgcucg--UGUCGCcGCugGa -3'
miRNA:   3'- -UUGCCGGaacaaaaACAGCGaCGugU- -5'
6752 5' -50.2 NC_001875.2 + 86227 0.66 0.983691
Target:  5'- uGCGGCUggUGUUggag-UGCUGCGCGc -3'
miRNA:   3'- uUGCCGGa-ACAAaaacaGCGACGUGU- -5'
6752 5' -50.2 NC_001875.2 + 124883 0.66 0.983691
Target:  5'- cAGCGcGCCgUGgcgaUGUCGCgGCGCAc -3'
miRNA:   3'- -UUGC-CGGaACaaaaACAGCGaCGUGU- -5'
6752 5' -50.2 NC_001875.2 + 97922 0.67 0.981811
Target:  5'- --gGGCCaccucaacgUGUCGCUGCACc -3'
miRNA:   3'- uugCCGGaacaaaa--ACAGCGACGUGu -5'
6752 5' -50.2 NC_001875.2 + 108738 0.67 0.976798
Target:  5'- cAGCGGCCuUUGgcgg-GgcaGCUGCACGc -3'
miRNA:   3'- -UUGCCGG-AACaaaaaCag-CGACGUGU- -5'
6752 5' -50.2 NC_001875.2 + 79587 0.67 0.973225
Target:  5'- cACGGCCUcgacGUUUUUGUgcaaguagaaaauuUGCUGCgACAc -3'
miRNA:   3'- uUGCCGGAa---CAAAAACA--------------GCGACG-UGU- -5'
6752 5' -50.2 NC_001875.2 + 96839 0.67 0.971144
Target:  5'- uGCGcGCCUUGUUUgacggCGCgcGCACAa -3'
miRNA:   3'- uUGC-CGGAACAAAaaca-GCGa-CGUGU- -5'
6752 5' -50.2 NC_001875.2 + 72642 0.68 0.956996
Target:  5'- cGGCGGCCUgcugUGUcUUUGUUGC-GUACu -3'
miRNA:   3'- -UUGCCGGA----ACAaAAACAGCGaCGUGu -5'
6752 5' -50.2 NC_001875.2 + 64824 0.69 0.946547
Target:  5'- uGCGGCugcgcuugcgCUUGagcccgauugUGUCGCUGCGCAg -3'
miRNA:   3'- uUGCCG----------GAACaaaa------ACAGCGACGUGU- -5'
6752 5' -50.2 NC_001875.2 + 11674 0.69 0.940745
Target:  5'- gAACGGCCgcgggcgaacugcugUUGUUgccGUUGCUGCugGa -3'
miRNA:   3'- -UUGCCGG---------------AACAAaaaCAGCGACGugU- -5'
6752 5' -50.2 NC_001875.2 + 6989 0.69 0.938724
Target:  5'- aAGCGGCCggUGUgggUGU-GCUGCugGc -3'
miRNA:   3'- -UUGCCGGa-ACAaaaACAgCGACGugU- -5'
6752 5' -50.2 NC_001875.2 + 29519 0.69 0.938724
Target:  5'- cGCGGCUUUGUUUUUcaUGuCUGCGCc -3'
miRNA:   3'- uUGCCGGAACAAAAAcaGC-GACGUGu -5'
6752 5' -50.2 NC_001875.2 + 52346 0.69 0.927962
Target:  5'- cGGCGcGCCUcGaa-UUGUUGCUGCGCGa -3'
miRNA:   3'- -UUGC-CGGAaCaaaAACAGCGACGUGU- -5'
6752 5' -50.2 NC_001875.2 + 94905 0.7 0.9161
Target:  5'- aGAUGGCCaacguuuccaUGUUUgcgcaGUCGCUGCACu -3'
miRNA:   3'- -UUGCCGGa---------ACAAAaa---CAGCGACGUGu -5'
6752 5' -50.2 NC_001875.2 + 96271 0.72 0.823092
Target:  5'- uGGCGGCCaUGUUcacGUCGUUGCugGg -3'
miRNA:   3'- -UUGCCGGaACAAaaaCAGCGACGugU- -5'
6752 5' -50.2 NC_001875.2 + 66192 0.78 0.517569
Target:  5'- -gUGGCCcUGUUUUUGUUGCUGUAUg -3'
miRNA:   3'- uuGCCGGaACAAAAACAGCGACGUGu -5'
6752 5' -50.2 NC_001875.2 + 104884 1.07 0.009022
Target:  5'- gAACGGCCUUGUUUUUGUCGCUGCACAa -3'
miRNA:   3'- -UUGCCGGAACAAAAACAGCGACGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.