miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6754 3' -54.5 NC_001875.2 + 121664 0.66 0.915228
Target:  5'- aGUUgucgGCgGUGACGGUGGUCUc-- -3'
miRNA:   3'- aCGAaaa-CGaCGCUGCCGCCAGAcuu -5'
6754 3' -54.5 NC_001875.2 + 38670 0.66 0.909047
Target:  5'- cUGCUcaUGUccaucaagUGCGGCGGCGuGgggCUGAAc -3'
miRNA:   3'- -ACGAaaACG--------ACGCUGCCGC-Ca--GACUU- -5'
6754 3' -54.5 NC_001875.2 + 23162 0.66 0.909047
Target:  5'- gGCg---GCUGCGggcACGGCGG-CUGc- -3'
miRNA:   3'- aCGaaaaCGACGC---UGCCGCCaGACuu -5'
6754 3' -54.5 NC_001875.2 + 89375 0.66 0.881807
Target:  5'- cGCgugUUGCUGCGugGcucgccgcaGCGGccgCUGAc -3'
miRNA:   3'- aCGaa-AACGACGCugC---------CGCCa--GACUu -5'
6754 3' -54.5 NC_001875.2 + 73696 0.67 0.866731
Target:  5'- gGCggcUGCUGCGGCGGCugcGG-CUGu- -3'
miRNA:   3'- aCGaaaACGACGCUGCCG---CCaGACuu -5'
6754 3' -54.5 NC_001875.2 + 73638 0.67 0.842423
Target:  5'- cUGCggcgGCUGCuGCGGCGG-CUGc- -3'
miRNA:   3'- -ACGaaaaCGACGcUGCCGCCaGACuu -5'
6754 3' -54.5 NC_001875.2 + 29072 0.68 0.833897
Target:  5'- gGCgugUUGCUGCcACGGCGcGUCg--- -3'
miRNA:   3'- aCGaa-AACGACGcUGCCGC-CAGacuu -5'
6754 3' -54.5 NC_001875.2 + 101998 0.68 0.833897
Target:  5'- uUGCggcgUGCgcgGCGGCGGUGGaCUGc- -3'
miRNA:   3'- -ACGaaa-ACGa--CGCUGCCGCCaGACuu -5'
6754 3' -54.5 NC_001875.2 + 85825 0.68 0.833897
Target:  5'- gGCgccaGCUGCGugGGCGG-CcGAu -3'
miRNA:   3'- aCGaaaaCGACGCugCCGCCaGaCUu -5'
6754 3' -54.5 NC_001875.2 + 3191 0.68 0.822518
Target:  5'- cGCgcaccagagacagGUUGCGGCGGCGGUUgGAu -3'
miRNA:   3'- aCGaaaa---------CGACGCUGCCGCCAGaCUu -5'
6754 3' -54.5 NC_001875.2 + 47331 0.68 0.816258
Target:  5'- cGCacgUGCUGuCGGCGGCGGccaaUGAc -3'
miRNA:   3'- aCGaaaACGAC-GCUGCCGCCag--ACUu -5'
6754 3' -54.5 NC_001875.2 + 73787 0.68 0.807163
Target:  5'- ----gUUGUgGCGGCGGCGG-CUGGAa -3'
miRNA:   3'- acgaaAACGaCGCUGCCGCCaGACUU- -5'
6754 3' -54.5 NC_001875.2 + 58068 0.69 0.778887
Target:  5'- cGCUgaccgcGCUGU--CGGCGGUCUGGc -3'
miRNA:   3'- aCGAaaa---CGACGcuGCCGCCAGACUu -5'
6754 3' -54.5 NC_001875.2 + 98745 0.69 0.769165
Target:  5'- gUGCg--UGCUcagccGCGACGGCGccgccaucaaaGUCUGGAg -3'
miRNA:   3'- -ACGaaaACGA-----CGCUGCCGC-----------CAGACUU- -5'
6754 3' -54.5 NC_001875.2 + 73672 0.7 0.708417
Target:  5'- gGCUgcUGCUGCGGCGGCuG-CUGc- -3'
miRNA:   3'- aCGAaaACGACGCUGCCGcCaGACuu -5'
6754 3' -54.5 NC_001875.2 + 73606 0.7 0.687498
Target:  5'- aGCgccaacUGUUGCGGCGGCGG-CUGc- -3'
miRNA:   3'- aCGaaa---ACGACGCUGCCGCCaGACuu -5'
6754 3' -54.5 NC_001875.2 + 68547 0.72 0.592007
Target:  5'- aGCggUUUGCcgccgcgGCGGCGGCGGUCg--- -3'
miRNA:   3'- aCGa-AAACGa------CGCUGCCGCCAGacuu -5'
6754 3' -54.5 NC_001875.2 + 104960 0.73 0.560439
Target:  5'- uUGCUcgUG-UGCGGCGGCGGgCUGGu -3'
miRNA:   3'- -ACGAaaACgACGCUGCCGCCaGACUu -5'
6754 3' -54.5 NC_001875.2 + 70045 0.75 0.431251
Target:  5'- gUGCggUcGCUGCGACGGaCGGgccUCUGAAg -3'
miRNA:   3'- -ACGaaAaCGACGCUGCC-GCC---AGACUU- -5'
6754 3' -54.5 NC_001875.2 + 103938 0.79 0.271231
Target:  5'- cGCgg--GCUGCGACGGCGGcCUGu- -3'
miRNA:   3'- aCGaaaaCGACGCUGCCGCCaGACuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.