miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6756 5' -52.2 NC_001875.2 + 115764 0.66 0.974674
Target:  5'- gCGCCAAACcGG-CGCCGuGUg---- -3'
miRNA:   3'- aGCGGUUUGaCCuGCGGCuCAagaaa -5'
6756 5' -52.2 NC_001875.2 + 68588 0.66 0.974674
Target:  5'- gCGCC--GCUGGcCGCCGAGc----- -3'
miRNA:   3'- aGCGGuuUGACCuGCGGCUCaagaaa -5'
6756 5' -52.2 NC_001875.2 + 115508 0.66 0.971858
Target:  5'- aCGCgAAACcugugGGACGCCGuGUUg--- -3'
miRNA:   3'- aGCGgUUUGa----CCUGCGGCuCAAgaaa -5'
6756 5' -52.2 NC_001875.2 + 10283 0.66 0.971858
Target:  5'- aCGCCG---UGGugGUCGAGgcCUUUg -3'
miRNA:   3'- aGCGGUuugACCugCGGCUCaaGAAA- -5'
6756 5' -52.2 NC_001875.2 + 122708 0.66 0.970971
Target:  5'- aCaCCGAACUGGcgcgcgaguccacgGCGuCCGAGUUCg-- -3'
miRNA:   3'- aGcGGUUUGACC--------------UGC-GGCUCAAGaaa -5'
6756 5' -52.2 NC_001875.2 + 117383 0.66 0.968824
Target:  5'- gCGCCGAgcuuGCUGGcCGCgGGcUUCUUUg -3'
miRNA:   3'- aGCGGUU----UGACCuGCGgCUcAAGAAA- -5'
6756 5' -52.2 NC_001875.2 + 29253 0.66 0.965563
Target:  5'- cUGCCGuccauuggcGGCUGGACGCUGuccgacccGUUCUa- -3'
miRNA:   3'- aGCGGU---------UUGACCUGCGGCu-------CAAGAaa -5'
6756 5' -52.2 NC_001875.2 + 98699 0.66 0.96207
Target:  5'- aCGCCAauggacagGugUGGACGgCCGAgacGUUCa-- -3'
miRNA:   3'- aGCGGU--------UugACCUGC-GGCU---CAAGaaa -5'
6756 5' -52.2 NC_001875.2 + 52143 0.67 0.958338
Target:  5'- aUCGCCAAACUG--UGCCGGGa----- -3'
miRNA:   3'- -AGCGGUUUGACcuGCGGCUCaagaaa -5'
6756 5' -52.2 NC_001875.2 + 110694 0.67 0.958338
Target:  5'- -gGCCGcGgaGGGCGCCGcGUUCg-- -3'
miRNA:   3'- agCGGUuUgaCCUGCGGCuCAAGaaa -5'
6756 5' -52.2 NC_001875.2 + 27892 0.67 0.954362
Target:  5'- uUCGCCGuGCUGGccaucggcgacgACGCCGuuaugaAGUUCa-- -3'
miRNA:   3'- -AGCGGUuUGACC------------UGCGGC------UCAAGaaa -5'
6756 5' -52.2 NC_001875.2 + 54931 0.67 0.954362
Target:  5'- cUCGUCGucGCUGGGCGCCGccc-CUUUg -3'
miRNA:   3'- -AGCGGUu-UGACCUGCGGCucaaGAAA- -5'
6756 5' -52.2 NC_001875.2 + 81949 0.67 0.953951
Target:  5'- cUCGCCGGaccacacgcucguGCUGGAcguCGCCGAGcagaUUCa-- -3'
miRNA:   3'- -AGCGGUU-------------UGACCU---GCGGCUC----AAGaaa -5'
6756 5' -52.2 NC_001875.2 + 7015 0.67 0.945659
Target:  5'- gCGCCAGuuGCUGGACGUaagCGAGg----- -3'
miRNA:   3'- aGCGGUU--UGACCUGCG---GCUCaagaaa -5'
6756 5' -52.2 NC_001875.2 + 70322 0.67 0.939454
Target:  5'- cCGCCAagcgcgagcacgcgGACUGcGGCGCCGAGc----- -3'
miRNA:   3'- aGCGGU--------------UUGAC-CUGCGGCUCaagaaa -5'
6756 5' -52.2 NC_001875.2 + 24199 0.68 0.925163
Target:  5'- uUUGCCcAACUGuGGCGCUGAGcgCg-- -3'
miRNA:   3'- -AGCGGuUUGAC-CUGCGGCUCaaGaaa -5'
6756 5' -52.2 NC_001875.2 + 88706 0.68 0.913349
Target:  5'- gCGCCAAAaacuUUGGgcgcaugcGCGCCGAGUUUa-- -3'
miRNA:   3'- aGCGGUUU----GACC--------UGCGGCUCAAGaaa -5'
6756 5' -52.2 NC_001875.2 + 120728 0.69 0.87178
Target:  5'- aUUGCCAAuugcaGCUGcGGCGCCGAGa----- -3'
miRNA:   3'- -AGCGGUU-----UGAC-CUGCGGCUCaagaaa -5'
6756 5' -52.2 NC_001875.2 + 86373 0.7 0.855177
Target:  5'- gCGCUAGACgcgcGGcugcgggcgccgaGCGCCGAGUUCg-- -3'
miRNA:   3'- aGCGGUUUGa---CC-------------UGCGGCUCAAGaaa -5'
6756 5' -52.2 NC_001875.2 + 9113 0.7 0.836741
Target:  5'- cCGCCAcgAACUcGGACGCCGuggacucgcgcgccAGUUCg-- -3'
miRNA:   3'- aGCGGU--UUGA-CCUGCGGC--------------UCAAGaaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.