miRNA display CGI


Results 41 - 60 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 5' -58.9 NC_001875.2 + 43116 0.66 0.684895
Target:  5'- --cGGCAGGUuggaGCcgCCGCGCauccacUGCAGGCUu -3'
miRNA:   3'- aauUCGUUCG----CG--GGCGCG------ACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 43767 0.66 0.680791
Target:  5'- ---cGCGGGCGUuuGCGCagacguaacguacGCGGGCg -3'
miRNA:   3'- aauuCGUUCGCGggCGCGa------------CGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 110505 0.66 0.674623
Target:  5'- -cAAGCAcGuCGCCCagGUgGCcGCGGGCCa -3'
miRNA:   3'- aaUUCGUuC-GCGGG--CG-CGaCGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 36301 0.66 0.674623
Target:  5'- -cGGGCucAGCGaucgaaugcgauCCCGCGCUG-GGGCUg -3'
miRNA:   3'- aaUUCGu-UCGC------------GGGCGCGACgUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 90356 0.66 0.674623
Target:  5'- -gAAGC-AGUuuaCCgGCGCauacUGCAGGCCg -3'
miRNA:   3'- aaUUCGuUCGc--GGgCGCG----ACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 36421 0.66 0.674623
Target:  5'- --uGGCcGGCG-CCGCGgUGuCGGGCUg -3'
miRNA:   3'- aauUCGuUCGCgGGCGCgAC-GUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 117322 0.66 0.674623
Target:  5'- gUUGAGCGgcuugacacGGCG-CgGCGCgggcgaaccgGCGGGCCg -3'
miRNA:   3'- -AAUUCGU---------UCGCgGgCGCGa---------CGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 59249 0.66 0.674623
Target:  5'- -cGAGCGcgaAGCGUacgaGCGCaauuUGCGGGCUa -3'
miRNA:   3'- aaUUCGU---UCGCGgg--CGCG----ACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 4469 0.66 0.674623
Target:  5'- cUGAGCGc-CGUCCGCGCaUGCuuucAGGCa -3'
miRNA:   3'- aAUUCGUucGCGGGCGCG-ACG----UCCGg -5'
6757 5' -58.9 NC_001875.2 + 95405 0.66 0.673594
Target:  5'- ---cGCAGcGCGCCgGCGUcGCaaagguaAGGCCu -3'
miRNA:   3'- aauuCGUU-CGCGGgCGCGaCG-------UCCGG- -5'
6757 5' -58.9 NC_001875.2 + 45459 0.66 0.673594
Target:  5'- --cGGCGcucGGCGCCCGCagccgcgcgucuaGC-GCGGuGCCa -3'
miRNA:   3'- aauUCGU---UCGCGGGCG-------------CGaCGUC-CGG- -5'
6757 5' -58.9 NC_001875.2 + 105982 0.67 0.667411
Target:  5'- aUGGGCAGGCucuugaugcgccaugGCCCcgacuucaucuggGCGUUGCAGuGCUc -3'
miRNA:   3'- aAUUCGUUCG---------------CGGG-------------CGCGACGUC-CGG- -5'
6757 5' -58.9 NC_001875.2 + 83796 0.67 0.664316
Target:  5'- --uAGCGcGCGCCCucGUGcCUGUGGGCg -3'
miRNA:   3'- aauUCGUuCGCGGG--CGC-GACGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 37575 0.67 0.664316
Target:  5'- -cGAGUGGauGCGCCgGCGCgaGCGccgcGGCCg -3'
miRNA:   3'- aaUUCGUU--CGCGGgCGCGa-CGU----CCGG- -5'
6757 5' -58.9 NC_001875.2 + 7437 0.67 0.664316
Target:  5'- -aGGGCAAcugcGCGCCgGCGaUUGCGgcgguguacGGCCg -3'
miRNA:   3'- aaUUCGUU----CGCGGgCGC-GACGU---------CCGG- -5'
6757 5' -58.9 NC_001875.2 + 23085 0.67 0.664316
Target:  5'- --cGGCAAcccGCGCCgCGUgcaGCUGCcccgccaaAGGCCg -3'
miRNA:   3'- aauUCGUU---CGCGG-GCG---CGACG--------UCCGG- -5'
6757 5' -58.9 NC_001875.2 + 39978 0.67 0.664316
Target:  5'- --cAGCAGGCGCCCuGgGg-GCccguGGCCg -3'
miRNA:   3'- aauUCGUUCGCGGG-CgCgaCGu---CCGG- -5'
6757 5' -58.9 NC_001875.2 + 86366 0.67 0.664316
Target:  5'- --uGGCAccGCGCUagacgCGCgGCUGCGGGCg -3'
miRNA:   3'- aauUCGUu-CGCGG-----GCG-CGACGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 23170 0.67 0.664316
Target:  5'- -cGGGCAcGGCGgCUGCGg-GCAcGGCCg -3'
miRNA:   3'- aaUUCGU-UCGCgGGCGCgaCGU-CCGG- -5'
6757 5' -58.9 NC_001875.2 + 81351 0.67 0.664316
Target:  5'- ---cGCuGGUGCCgCGCGCacgcGCcGGCCg -3'
miRNA:   3'- aauuCGuUCGCGG-GCGCGa---CGuCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.