miRNA display CGI


Results 41 - 60 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6758 3' -68.8 NC_001875.2 + 66057 0.66 0.327491
Target:  5'- cUGGCGCUcaaCGaCGAcGCgCCGcCGCCCGCc -3'
miRNA:   3'- uGCCGCGG---GCcGCU-CG-GGC-GCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 92653 0.66 0.326805
Target:  5'- aGCGGCGCaCCGuaaaCGccacgcaaccgccGGCCCGC-CUCGCg -3'
miRNA:   3'- -UGCCGCG-GGCc---GC-------------UCGGGCGcGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 121140 0.66 0.326805
Target:  5'- uCGGCGUUCGaGCGGggcGUCCagccguugcggcaGCGCCUGCg -3'
miRNA:   3'- uGCCGCGGGC-CGCU---CGGG-------------CGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 46582 0.66 0.325437
Target:  5'- -gGGCGCUCGuguccgcgccgagcGCGGaaCCCGCGCUCGUc -3'
miRNA:   3'- ugCCGCGGGC--------------CGCUc-GGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 50025 0.66 0.320682
Target:  5'- gUGGuCGCCgggCGGCGAGgCgGCcgGCCCGUc -3'
miRNA:   3'- uGCC-GCGG---GCCGCUCgGgCG--CGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 114012 0.66 0.320682
Target:  5'- uCGGCGCCCucgcgcauGGCG-GCCgCGCgGUCCa- -3'
miRNA:   3'- uGCCGCGGG--------CCGCuCGG-GCG-CGGGcg -5'
6758 3' -68.8 NC_001875.2 + 96433 0.66 0.320682
Target:  5'- --cGCGCUuguCGGCGucGCUCGCGCgCGCc -3'
miRNA:   3'- ugcCGCGG---GCCGCu-CGGGCGCGgGCG- -5'
6758 3' -68.8 NC_001875.2 + 110382 0.66 0.320682
Target:  5'- uAUGGCcgacgGCUCGuGCGuGCCCGUggagaucaaguGCCCGUu -3'
miRNA:   3'- -UGCCG-----CGGGC-CGCuCGGGCG-----------CGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 105444 0.66 0.320682
Target:  5'- cCGGCGUuuGGCGAcaacgaguuGUuuGCGCacuguuuugcggCCGCg -3'
miRNA:   3'- uGCCGCGggCCGCU---------CGggCGCG------------GGCG- -5'
6758 3' -68.8 NC_001875.2 + 68585 0.66 0.320682
Target:  5'- gUGGCGCCgcUGGCcgccGAGCCCgacGCGUuuGUg -3'
miRNA:   3'- uGCCGCGG--GCCG----CUCGGG---CGCGggCG- -5'
6758 3' -68.8 NC_001875.2 + 54812 0.66 0.320007
Target:  5'- cGCGacGCGgCUGcCGAGCCCgaacaccucaaacGCGCCCGUg -3'
miRNA:   3'- -UGC--CGCgGGCcGCUCGGG-------------CGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 69202 0.66 0.318661
Target:  5'- cGCGGCGCCgaCGGCcaguacgcuuguucGGGCgaCGCGCgCUGUg -3'
miRNA:   3'- -UGCCGCGG--GCCG--------------CUCGg-GCGCG-GGCG- -5'
6758 3' -68.8 NC_001875.2 + 42944 0.67 0.31398
Target:  5'- gUGGCGUgCGucaGC-AGCCCGCGCagCGCg -3'
miRNA:   3'- uGCCGCGgGC---CGcUCGGGCGCGg-GCG- -5'
6758 3' -68.8 NC_001875.2 + 33401 0.67 0.31398
Target:  5'- cGCGguaGCGCUCguGGCuGAGCUgGCGCUCGUc -3'
miRNA:   3'- -UGC---CGCGGG--CCG-CUCGGgCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 46151 0.67 0.31398
Target:  5'- cGCGGCGCgcaagCUGGuCGAGUCgcugcaggccggCGCGCCCa- -3'
miRNA:   3'- -UGCCGCG-----GGCC-GCUCGG------------GCGCGGGcg -5'
6758 3' -68.8 NC_001875.2 + 76502 0.67 0.313316
Target:  5'- gGCGGCGCCCccgaagcGGCGcGUcaucaCCGuCGCgCGCc -3'
miRNA:   3'- -UGCCGCGGG-------CCGCuCG-----GGC-GCGgGCG- -5'
6758 3' -68.8 NC_001875.2 + 76912 0.67 0.31001
Target:  5'- gGCGGCGCCCaGCGAcgacgagagcgGCuCCagcgaggacgaagacGCGCCgUGCg -3'
miRNA:   3'- -UGCCGCGGGcCGCU-----------CG-GG---------------CGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 110691 0.67 0.307385
Target:  5'- aGCGGC-CgCGGaGGGCgCCGCGUUCGUg -3'
miRNA:   3'- -UGCCGcGgGCCgCUCG-GGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 36424 0.67 0.307385
Target:  5'- cCGGCGCCgCGGUgucGGGCUgGUGCuuaaaguccaggCCGCu -3'
miRNA:   3'- uGCCGCGG-GCCG---CUCGGgCGCG------------GGCG- -5'
6758 3' -68.8 NC_001875.2 + 122803 0.67 0.307385
Target:  5'- cCGGCGCggCCGGCG-GCUCcaaacgcaagGCGUCCGa -3'
miRNA:   3'- uGCCGCG--GGCCGCuCGGG----------CGCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.