miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
676 3' -56.4 AC_000018.1 + 21199 0.69 0.306621
Target:  5'- uGUGGCGCAuACcguuCUCCAGCaacuucaugUCCAUg -3'
miRNA:   3'- uCGCCGCGUuUGu---GAGGUCG---------AGGUGu -5'
676 3' -56.4 AC_000018.1 + 16181 0.68 0.365669
Target:  5'- gAGCGGC-CAGACGCg-CGGCUUCAg- -3'
miRNA:   3'- -UCGCCGcGUUUGUGagGUCGAGGUgu -5'
676 3' -56.4 AC_000018.1 + 12321 0.67 0.402766
Target:  5'- gGGCGGCGCu-GCAgagCCAGCcgUCCGgCAu -3'
miRNA:   3'- -UCGCCGCGuuUGUga-GGUCG--AGGU-GU- -5'
676 3' -56.4 AC_000018.1 + 17681 0.67 0.432108
Target:  5'- uGGCGGUuCAGGC-CUCgCAGCgCCACu -3'
miRNA:   3'- -UCGCCGcGUUUGuGAG-GUCGaGGUGu -5'
676 3' -56.4 AC_000018.1 + 10691 0.66 0.494309
Target:  5'- --gGGCGCGAGcCACUCcCAGCcCCGa- -3'
miRNA:   3'- ucgCCGCGUUU-GUGAG-GUCGaGGUgu -5'
676 3' -56.4 AC_000018.1 + 8537 0.68 0.39327
Target:  5'- cGCGGCGCcGACguaccACUgCCAGCcaugCCGCc -3'
miRNA:   3'- uCGCCGCGuUUG-----UGA-GGUCGa---GGUGu -5'
676 3' -56.4 AC_000018.1 + 25616 0.69 0.306621
Target:  5'- cAGCGGCaguGGCAUUCCAGCagaccgucUCCGCu -3'
miRNA:   3'- -UCGCCGcguUUGUGAGGUCG--------AGGUGu -5'
676 3' -56.4 AC_000018.1 + 24957 1.09 0.00038
Target:  5'- aAGCGGCGCAAACACUCCAGCUCCACAg -3'
miRNA:   3'- -UCGCCGCGUUUGUGAGGUCGAGGUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.