Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6763 | 3' | -44.6 | NC_001875.2 | + | 62738 | 0.66 | 0.999994 |
Target: 5'- --cGGcCGUA----AUGUACGUGUGGCc -3' miRNA: 3'- uuuUC-GCAUcaagUACAUGCACAUCG- -5' |
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6763 | 3' | -44.6 | NC_001875.2 | + | 29288 | 0.66 | 0.999992 |
Target: 5'- cGGGGCGcGG-UCGUGUgGCGUGUcguGCg -3' miRNA: 3'- uUUUCGCaUCaAGUACA-UGCACAu--CG- -5' |
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6763 | 3' | -44.6 | NC_001875.2 | + | 69564 | 0.66 | 0.99999 |
Target: 5'- ---cGCGUuaauggccgauacgcAGgugUCGgaGUACGUGUGGCg -3' miRNA: 3'- uuuuCGCA---------------UCa--AGUa-CAUGCACAUCG- -5' |
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6763 | 3' | -44.6 | NC_001875.2 | + | 100540 | 0.66 | 0.999988 |
Target: 5'- --cAGCGacaGGUUguUGUAUGUGgcGCu -3' miRNA: 3'- uuuUCGCa--UCAAguACAUGCACauCG- -5' |
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6763 | 3' | -44.6 | NC_001875.2 | + | 122877 | 0.67 | 0.999977 |
Target: 5'- ---cGUGUucaAGUUCcgGUACGUGUuggacgaaacGGCc -3' miRNA: 3'- uuuuCGCA---UCAAGuaCAUGCACA----------UCG- -5' |
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6763 | 3' | -44.6 | NC_001875.2 | + | 46690 | 0.67 | 0.999968 |
Target: 5'- -cGAGCG-AGUUCAagGUGCGcgacGUGGUg -3' miRNA: 3'- uuUUCGCaUCAAGUa-CAUGCa---CAUCG- -5' |
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6763 | 3' | -44.6 | NC_001875.2 | + | 131820 | 0.67 | 0.999941 |
Target: 5'- ---uGCGUGGggaCGUGUGCGUuuaGGCa -3' miRNA: 3'- uuuuCGCAUCaa-GUACAUGCAca-UCG- -5' |
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6763 | 3' | -44.6 | NC_001875.2 | + | 70187 | 0.68 | 0.999861 |
Target: 5'- gAAAAGUGUAG-UCAaGcgGCGUGUcGCg -3' miRNA: 3'- -UUUUCGCAUCaAGUaCa-UGCACAuCG- -5' |
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6763 | 3' | -44.6 | NC_001875.2 | + | 81574 | 0.72 | 0.993921 |
Target: 5'- --cGGUGUugcuGUUUAUGUACGUcgcgGUGGCg -3' miRNA: 3'- uuuUCGCAu---CAAGUACAUGCA----CAUCG- -5' |
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6763 | 3' | -44.6 | NC_001875.2 | + | 78879 | 0.8 | 0.794989 |
Target: 5'- --uGGCGUGGUUaaaGUugGUGUAGCg -3' miRNA: 3'- uuuUCGCAUCAAguaCAugCACAUCG- -5' |
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6763 | 3' | -44.6 | NC_001875.2 | + | 94594 | 1.13 | 0.019255 |
Target: 5'- aAAAAGCGUAGUUCAUGUACGUGUAGCg -3' miRNA: 3'- -UUUUCGCAUCAAGUACAUGCACAUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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