Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 6766 | 5' | -51.8 | NC_001875.2 | + | 26054 | 0.72 | 0.830471 |
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Target: 5'- ---gGCCaaGGAAGACCUGcUGAUGUGGg -3' miRNA: 3'- cuuaCGG--CCUUUUGGGCuGCUGCACC- -5' |
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| 6766 | 5' | -51.8 | NC_001875.2 | + | 111712 | 0.72 | 0.80394 |
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Target: 5'- ---cGCUGGAAAuuCCCGcCGACGUGc -3' miRNA: 3'- cuuaCGGCCUUUu-GGGCuGCUGCACc -5' |
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| 6766 | 5' | -51.8 | NC_001875.2 | + | 18189 | 0.72 | 0.80394 |
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Target: 5'- cGGUGCCGGcgGGCguaGGCGugGUGGu -3' miRNA: 3'- cUUACGGCCuuUUGgg-CUGCugCACC- -5' |
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| 6766 | 5' | -51.8 | NC_001875.2 | + | 68997 | 0.75 | 0.696064 |
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Target: 5'- gGAGUGCCGcGggGGCaaGcACGugGUGGc -3' miRNA: 3'- -CUUACGGC-CuuUUGggC-UGCugCACC- -5' |
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| 6766 | 5' | -51.8 | NC_001875.2 | + | 94688 | 0.76 | 0.643991 |
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Target: 5'- cGggUGCUGGA--ACCCGGCGAUGc-- -3' miRNA: 3'- -CuuACGGCCUuuUGGGCUGCUGCacc -5' |
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| 6766 | 5' | -51.8 | NC_001875.2 | + | 125460 | 0.76 | 0.633511 |
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Target: 5'- -cGUGCCGGGccgcgcgguGCCCGACGACGa-- -3' miRNA: 3'- cuUACGGCCUuu-------UGGGCUGCUGCacc -5' |
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| 6766 | 5' | -51.8 | NC_001875.2 | + | 92619 | 1.11 | 0.005928 |
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Target: 5'- cGAAUGCCGGAAAACCCGACGACGUGGc -3' miRNA: 3'- -CUUACGGCCUUUUGGGCUGCUGCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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