miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6767 3' -52.3 NC_001875.2 + 66111 0.66 0.9705
Target:  5'- cGCGCGgCGgg--CGGCGAgGCGgcGCc -3'
miRNA:   3'- aCGCGCgGUaacaGCCGUU-UGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 116904 0.66 0.9705
Target:  5'- cUGCGCuaGCCGcgcgCGGCGggUGgcGCa -3'
miRNA:   3'- -ACGCG--CGGUaacaGCCGUuuGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 29769 0.66 0.9705
Target:  5'- gGCGuCGCCA-UGUaCGGCcgcgGGugGAcgGGCg -3'
miRNA:   3'- aCGC-GCGGUaACA-GCCG----UUugCU--UCG- -5'
6767 3' -52.3 NC_001875.2 + 111463 0.66 0.9705
Target:  5'- cGgGCGCCcuucaaaUCGGCGGACaaGAGGUg -3'
miRNA:   3'- aCgCGCGGuaac---AGCCGUUUG--CUUCG- -5'
6767 3' -52.3 NC_001875.2 + 6197 0.66 0.9705
Target:  5'- cGCGCGCCGUUucaaagCGcGCAAuuGCGuccgucGGCg -3'
miRNA:   3'- aCGCGCGGUAAca----GC-CGUU--UGCu-----UCG- -5'
6767 3' -52.3 NC_001875.2 + 76898 0.66 0.9705
Target:  5'- cGCGCGCgCAaagGggCGGCGcccagcgacGACGAgAGCg -3'
miRNA:   3'- aCGCGCG-GUaa-Ca-GCCGU---------UUGCU-UCG- -5'
6767 3' -52.3 NC_001875.2 + 63697 0.66 0.970199
Target:  5'- aGCGUucGCCGaugcgguUUGUCGGUcgcGGCGAcGGCg -3'
miRNA:   3'- aCGCG--CGGU-------AACAGCCGu--UUGCU-UCG- -5'
6767 3' -52.3 NC_001875.2 + 99874 0.66 0.970199
Target:  5'- cGCGCGCCAcacgcguucgucgUcGcCGGCAGccuCGAGcGCa -3'
miRNA:   3'- aCGCGCGGU-------------AaCaGCCGUUu--GCUU-CG- -5'
6767 3' -52.3 NC_001875.2 + 2952 0.66 0.967387
Target:  5'- gGCGCGCU--UGcUCGGCA-GCGguGUc -3'
miRNA:   3'- aCGCGCGGuaAC-AGCCGUuUGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 50371 0.66 0.967387
Target:  5'- cGCGCGCCAcUGaCcGCGGACc-AGCg -3'
miRNA:   3'- aCGCGCGGUaACaGcCGUUUGcuUCG- -5'
6767 3' -52.3 NC_001875.2 + 10399 0.66 0.967387
Target:  5'- cGcCGCGCCGUggcgCGGCAccCGcuGCa -3'
miRNA:   3'- aC-GCGCGGUAaca-GCCGUuuGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 75450 0.66 0.967387
Target:  5'- --aGgGCUgaUGUCGaGCAAAgGAAGCg -3'
miRNA:   3'- acgCgCGGuaACAGC-CGUUUgCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 36217 0.66 0.967387
Target:  5'- gUGUGauCGCCAgcg-CGGCAAGCGAucugacauGCg -3'
miRNA:   3'- -ACGC--GCGGUaacaGCCGUUUGCUu-------CG- -5'
6767 3' -52.3 NC_001875.2 + 71917 0.66 0.967387
Target:  5'- gGCGUGCgc--GUCGGCGAGCGccuugaccGCg -3'
miRNA:   3'- aCGCGCGguaaCAGCCGUUUGCuu------CG- -5'
6767 3' -52.3 NC_001875.2 + 89561 0.66 0.967387
Target:  5'- cGgGUGCCcagUGUUGGCGAgagcGCGcAGUg -3'
miRNA:   3'- aCgCGCGGua-ACAGCCGUU----UGCuUCG- -5'
6767 3' -52.3 NC_001875.2 + 129770 0.66 0.967387
Target:  5'- cUGCGCGg----GUCGGUugcCGGAGCa -3'
miRNA:   3'- -ACGCGCgguaaCAGCCGuuuGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 50542 0.66 0.966738
Target:  5'- gGCGcCGCCGg---CGGCGcgcgugucuuuuGCGggGCa -3'
miRNA:   3'- aCGC-GCGGUaacaGCCGUu-----------UGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 13551 0.66 0.966738
Target:  5'- aGCGCGCCAgcugcagccacucUUGcgUGGCGuuguaguaaucaaAGuCGAGGCa -3'
miRNA:   3'- aCGCGCGGU-------------AACa-GCCGU-------------UU-GCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 97467 0.66 0.966409
Target:  5'- cGC-UGCCGUUGUaCGGCAGcaacugcgucucuuGCGccGCg -3'
miRNA:   3'- aCGcGCGGUAACA-GCCGUU--------------UGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 13531 0.66 0.966079
Target:  5'- cGCGCgGCCGgccgccucgacccUGUCGGCGuacAAC-AGGCa -3'
miRNA:   3'- aCGCG-CGGUa------------ACAGCCGU---UUGcUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.