miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6767 5' -49.7 NC_001875.2 + 116684 0.68 0.953737
Target:  5'- aUGCUGCUG-UGCUAcaaggguuuGgAGAUGCGCAg -3'
miRNA:   3'- aACGACGACaACGAU---------CgUUUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 34615 0.69 0.949278
Target:  5'- -aGUUGCUGUUGUaaccGGCAccauGGCGCACc -3'
miRNA:   3'- aaCGACGACAACGa---UCGU----UUGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 75754 0.69 0.944542
Target:  5'- gUGCaGCUGUUGCUgcAGCugcucAAGCAaCGCAg -3'
miRNA:   3'- aACGaCGACAACGA--UCG-----UUUGU-GUGU- -5'
6767 5' -49.7 NC_001875.2 + 120938 0.69 0.934228
Target:  5'- --uCUGCUGUUGCU-GCugauaguuGAGCACGCGu -3'
miRNA:   3'- aacGACGACAACGAuCG--------UUUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 125533 0.69 0.934228
Target:  5'- -cGCUGCcccaccaugcuUGUUGCgguGCAuugGACGCACGg -3'
miRNA:   3'- aaCGACG-----------ACAACGau-CGU---UUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 109100 0.69 0.928644
Target:  5'- gUGCUGgaGcggUGCgUGGCcGGCGCACAa -3'
miRNA:   3'- aACGACgaCa--ACG-AUCGuUUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 116767 0.69 0.926913
Target:  5'- -aGCUGCUgGUUGCUguuugugguguuucAGCcacAGAUACACAa -3'
miRNA:   3'- aaCGACGA-CAACGA--------------UCG---UUUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 95684 0.7 0.922775
Target:  5'- aUGCUuaaGCUGgcccacUUGCU-GCAAACGCGCGu -3'
miRNA:   3'- aACGA---CGAC------AACGAuCGUUUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 127281 0.7 0.909524
Target:  5'- -gGCUGCUcgcGUUGCUGGCGgcccccaAAC-CGCAg -3'
miRNA:   3'- aaCGACGA---CAACGAUCGU-------UUGuGUGU- -5'
6767 5' -49.7 NC_001875.2 + 125051 0.7 0.896464
Target:  5'- aUGUUGCUGUUgGCgaAGCu-GCGCACAc -3'
miRNA:   3'- aACGACGACAA-CGa-UCGuuUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 49981 0.7 0.894311
Target:  5'- cUGCUGCUGUaGCUgacgcGGCGcuugucgcgguuggGGCGCGCGu -3'
miRNA:   3'- aACGACGACAaCGA-----UCGU--------------UUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 118466 0.71 0.88919
Target:  5'- cUGCgucgcGCUGUggaaaacgGCUAGCAcGCACGCc -3'
miRNA:   3'- aACGa----CGACAa-------CGAUCGUuUGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 123998 0.72 0.812394
Target:  5'- -gGCUGCaUGUUGCgcGCGAcCACGCu -3'
miRNA:   3'- aaCGACG-ACAACGauCGUUuGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 39109 0.74 0.73077
Target:  5'- cUGCUGCaccgGUUaGCUGGCGGGCAgCGCGc -3'
miRNA:   3'- aACGACGa---CAA-CGAUCGUUUGU-GUGU- -5'
6767 5' -49.7 NC_001875.2 + 120556 0.75 0.69815
Target:  5'- -gGCaGCUGUUGUUuugAGCGAGCGCGCc -3'
miRNA:   3'- aaCGaCGACAACGA---UCGUUUGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 47650 0.76 0.620253
Target:  5'- -gGCaGCUGUUGC--GCAAACGCACGg -3'
miRNA:   3'- aaCGaCGACAACGauCGUUUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 92256 1.07 0.008935
Target:  5'- cUUGCUGCUGUUGCUAGCAAACACACAa -3'
miRNA:   3'- -AACGACGACAACGAUCGUUUGUGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.