miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6768 3' -57.7 NC_001875.2 + 128691 0.67 0.758236
Target:  5'- cUCGccGCCCGaCGCCGCGUccgcgcaGCGGGc- -3'
miRNA:   3'- -GGCaaCGGGCgGCGGUGCA-------UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 111976 0.66 0.830786
Target:  5'- aCGgcGCCCG-CGCCGCGacGCGGc-- -3'
miRNA:   3'- gGCaaCGGGCgGCGGUGCa-UGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 41843 0.66 0.830786
Target:  5'- uCCaGUUGCCgCGCCGCgGCG-GCGa--- -3'
miRNA:   3'- -GG-CAACGG-GCGGCGgUGCaUGCcuuu -5'
6768 3' -57.7 NC_001875.2 + 12289 0.66 0.822378
Target:  5'- aCCGUgugcaGCCggcaCGCCGCCGUGUGCGuGGu- -3'
miRNA:   3'- -GGCAa----CGG----GCGGCGGUGCAUGC-CUuu -5'
6768 3' -57.7 NC_001875.2 + 2296 0.66 0.822378
Target:  5'- aCGccgGCCCGCCGUggaGCaUACGGAc- -3'
miRNA:   3'- gGCaa-CGGGCGGCGg--UGcAUGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 103458 0.66 0.813798
Target:  5'- gCGUcgUGCaCGCCGCgACGUACGa--- -3'
miRNA:   3'- gGCA--ACGgGCGGCGgUGCAUGCcuuu -5'
6768 3' -57.7 NC_001875.2 + 89706 0.66 0.796157
Target:  5'- aCCuUUGCCCGCCaGCUAaucACGGAc- -3'
miRNA:   3'- -GGcAACGGGCGG-CGGUgcaUGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 102995 0.67 0.787112
Target:  5'- gCGacaagUGCCCGCCGUC-CGUGuCGGc-- -3'
miRNA:   3'- gGCa----ACGGGCGGCGGuGCAU-GCCuuu -5'
6768 3' -57.7 NC_001875.2 + 73024 0.67 0.784372
Target:  5'- gCCGUUGCCCGCCugguaguuguugucGaCUACGUucGCGucGAAAa -3'
miRNA:   3'- -GGCAACGGGCGG--------------C-GGUGCA--UGC--CUUU- -5'
6768 3' -57.7 NC_001875.2 + 1787 0.67 0.77793
Target:  5'- gCCGccGCcgCCGCCGCCAuuucCGUcgGCGGAu- -3'
miRNA:   3'- -GGCaaCG--GGCGGCGGU----GCA--UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 23786 0.67 0.77793
Target:  5'- aCGUUGCCCagGUCGCCgACGUgucgcuccGCGGc-- -3'
miRNA:   3'- gGCAACGGG--CGGCGG-UGCA--------UGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 117939 0.73 0.408836
Target:  5'- gCCGgcgUGCgCGCCGCCGCGUuuGGu-- -3'
miRNA:   3'- -GGCa--ACGgGCGGCGGUGCAugCCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.