Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6768 | 3' | -57.7 | NC_001875.2 | + | 23786 | 0.67 | 0.77793 |
Target: 5'- aCGUUGCCCagGUCGCCgACGUgucgcuccGCGGc-- -3' miRNA: 3'- gGCAACGGG--CGGCGG-UGCA--------UGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 33950 | 0.67 | 0.768618 |
Target: 5'- gCCGacGCCCGCaacguGCC-CGUGCGGc-- -3' miRNA: 3'- -GGCaaCGGGCGg----CGGuGCAUGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 92023 | 0.67 | 0.759186 |
Target: 5'- aCCGUgccaaaGUCgGCCGCCgACGUccACGGGc- -3' miRNA: 3'- -GGCAa-----CGGgCGGCGG-UGCA--UGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 128691 | 0.67 | 0.758236 |
Target: 5'- cUCGccGCCCGaCGCCGCGUccgcgcaGCGGGc- -3' miRNA: 3'- -GGCaaCGGGCgGCGGUGCA-------UGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 68953 | 0.67 | 0.750602 |
Target: 5'- gUCGUUGUcuuCCGgCGCCACGcauuugcacagcaagGCGGAAAc -3' miRNA: 3'- -GGCAACG---GGCgGCGGUGCa--------------UGCCUUU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 62715 | 0.67 | 0.749642 |
Target: 5'- aCGUUGCaaaCGCUGCUGCGUgugcaACGGcAAGa -3' miRNA: 3'- gGCAACGg--GCGGCGGUGCA-----UGCC-UUU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 99059 | 0.67 | 0.749642 |
Target: 5'- gCGgcGCCCGCCcacGCCGCGcgaGGAc- -3' miRNA: 3'- gGCaaCGGGCGG---CGGUGCaugCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 62558 | 0.67 | 0.748682 |
Target: 5'- aCGUUGUgcggguggacuugCCGCCGCCACGgcucgagccGCGGc-- -3' miRNA: 3'- gGCAACG-------------GGCGGCGGUGCa--------UGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 49388 | 0.68 | 0.720436 |
Target: 5'- aCCGUU-CCUGCCGCCGCGaACu---- -3' miRNA: 3'- -GGCAAcGGGCGGCGGUGCaUGccuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 110635 | 0.68 | 0.720436 |
Target: 5'- cCCGUuuUGUUgGCCGCCaaACGUugcgaGCGGGAGc -3' miRNA: 3'- -GGCA--ACGGgCGGCGG--UGCA-----UGCCUUU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 61895 | 0.68 | 0.720436 |
Target: 5'- gCCGUgGCCCGacacgCGCCGUGUcacgGCGGAAAc -3' miRNA: 3'- -GGCAaCGGGCg----GCGGUGCA----UGCCUUU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 1733 | 0.68 | 0.720436 |
Target: 5'- aCCGgucGCgCCGCCGCCGCcgccauuuccGUcgGCGGAu- -3' miRNA: 3'- -GGCaa-CG-GGCGGCGGUG----------CA--UGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 92228 | 0.68 | 0.720436 |
Target: 5'- gCCGggGCCgGCCGCUAcuuuagccCGUgcacGCGGAc- -3' miRNA: 3'- -GGCaaCGGgCGGCGGU--------GCA----UGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 98704 | 0.68 | 0.680485 |
Target: 5'- gCUGUUGCCCuGCCGCCAUuuuuguguGUGCa---- -3' miRNA: 3'- -GGCAACGGG-CGGCGGUG--------CAUGccuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 95738 | 0.69 | 0.670377 |
Target: 5'- -aGcgGCgCCGCCGCCGCGUGCu---- -3' miRNA: 3'- ggCaaCG-GGCGGCGGUGCAUGccuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 28939 | 0.69 | 0.660239 |
Target: 5'- uCCGUUcaacgGCCgGCCGCUcaAUGUGCGGu-- -3' miRNA: 3'- -GGCAA-----CGGgCGGCGG--UGCAUGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 102810 | 0.69 | 0.650077 |
Target: 5'- gUCGUUuaGCCCGUCGCCGCcgcaaauCGGGAu -3' miRNA: 3'- -GGCAA--CGGGCGGCGGUGcau----GCCUUu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 89988 | 0.69 | 0.639902 |
Target: 5'- uUGUUGCagcuCGCCGCCGCGgcGCGGc-- -3' miRNA: 3'- gGCAACGg---GCGGCGGUGCa-UGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 66077 | 0.7 | 0.619541 |
Target: 5'- gCCGccGCCCGCCGCgCACGaaUACGccGAGg -3' miRNA: 3'- -GGCaaCGGGCGGCG-GUGC--AUGC--CUUu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 40578 | 0.7 | 0.619541 |
Target: 5'- -aGUUGCCCGCgCGCUACGUAa----- -3' miRNA: 3'- ggCAACGGGCG-GCGGUGCAUgccuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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