miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6769 3' -52.4 NC_001875.2 + 105842 0.76 0.53691
Target:  5'- gGCuGUUGGGGUcCAGCGagccGCCGUUGUa -3'
miRNA:   3'- gUG-CAACCUCAuGUCGCa---CGGCAACG- -5'
6769 3' -52.4 NC_001875.2 + 75570 0.66 0.978711
Target:  5'- gGCGUUGGuG-AUAGCGcUGgCGUcgGCg -3'
miRNA:   3'- gUGCAACCuCaUGUCGC-ACgGCAa-CG- -5'
6769 3' -52.4 NC_001875.2 + 75612 0.66 0.976257
Target:  5'- gGCGUUGGcGU-CGGCGuUGgCGUcgGCg -3'
miRNA:   3'- gUGCAACCuCAuGUCGC-ACgGCAa-CG- -5'
6769 3' -52.4 NC_001875.2 + 15801 0.66 0.976257
Target:  5'- gGCGgUGGgcgGGUacugcaccaccaACAGCGUGCCGcgagacUGCa -3'
miRNA:   3'- gUGCaACC---UCA------------UGUCGCACGGCa-----ACG- -5'
6769 3' -52.4 NC_001875.2 + 31660 0.66 0.967661
Target:  5'- aCACGcuucgucUGGAcugGgcCAGCGUGCCGgcGUg -3'
miRNA:   3'- -GUGCa------ACCU---CauGUCGCACGGCaaCG- -5'
6769 3' -52.4 NC_001875.2 + 73002 0.66 0.964358
Target:  5'- gCAUGUUGuuaaacACGGUGUcGCCGUUGCc -3'
miRNA:   3'- -GUGCAACcuca--UGUCGCA-CGGCAACG- -5'
6769 3' -52.4 NC_001875.2 + 44767 0.67 0.960827
Target:  5'- gCugGUUGGGGaACgAGCGccGCUGcUUGCu -3'
miRNA:   3'- -GugCAACCUCaUG-UCGCa-CGGC-AACG- -5'
6769 3' -52.4 NC_001875.2 + 84975 0.68 0.927676
Target:  5'- uCAUGUcaauUGGAGUggugggcauuuccaGCAGCGUGCgcaaCGUgUGCa -3'
miRNA:   3'- -GUGCA----ACCUCA--------------UGUCGCACG----GCA-ACG- -5'
6769 3' -52.4 NC_001875.2 + 23841 0.69 0.883273
Target:  5'- gGCGggUGGGGUuaaagugcucgccaGCGGaCGUgcaGCCGUUGCu -3'
miRNA:   3'- gUGCa-ACCUCA--------------UGUC-GCA---CGGCAACG- -5'
6769 3' -52.4 NC_001875.2 + 35776 0.7 0.838515
Target:  5'- gCGCGUUGuccaUAguGCGUGCCGgUGCg -3'
miRNA:   3'- -GUGCAACcuc-AUguCGCACGGCaACG- -5'
6769 3' -52.4 NC_001875.2 + 113601 0.71 0.803151
Target:  5'- gGCGUUcGAGUcgGCGGCGgGCCGcgGCg -3'
miRNA:   3'- gUGCAAcCUCA--UGUCGCaCGGCaaCG- -5'
6769 3' -52.4 NC_001875.2 + 51755 0.71 0.812263
Target:  5'- aCGCGaUGGAGUGCAagGUGCCGccaaagGCg -3'
miRNA:   3'- -GUGCaACCUCAUGUcgCACGGCaa----CG- -5'
6769 3' -52.4 NC_001875.2 + 88348 0.72 0.774863
Target:  5'- gGCGUcaaGGuGUGCAGCGUGCaCGg-GCa -3'
miRNA:   3'- gUGCAa--CCuCAUGUCGCACG-GCaaCG- -5'
6769 3' -52.4 NC_001875.2 + 121426 0.72 0.765149
Target:  5'- aAUGUUGGguAGUGCAGCGggUGCCGcgccacgGCg -3'
miRNA:   3'- gUGCAACC--UCAUGUCGC--ACGGCaa-----CG- -5'
6769 3' -52.4 NC_001875.2 + 121142 0.72 0.755308
Target:  5'- gGCGUUcGAGcGgGGCGUccaGCCGUUGCg -3'
miRNA:   3'- gUGCAAcCUCaUgUCGCA---CGGCAACG- -5'
6769 3' -52.4 NC_001875.2 + 86235 0.74 0.683743
Target:  5'- -gUGUUGGAGUGCuGCGcGCCGgaGUc -3'
miRNA:   3'- guGCAACCUCAUGuCGCaCGGCaaCG- -5'
6769 3' -52.4 NC_001875.2 + 49969 0.74 0.673258
Target:  5'- gCACGccgUGGAGUACAcuccCGUGUCGUUGa -3'
miRNA:   3'- -GUGCa--ACCUCAUGUc---GCACGGCAACg -5'
6769 3' -52.4 NC_001875.2 + 127998 0.75 0.588855
Target:  5'- aCAUGUUGGAGgcUGCGGcCGcGCCGgcgUGCg -3'
miRNA:   3'- -GUGCAACCUC--AUGUC-GCaCGGCa--ACG- -5'
6769 3' -52.4 NC_001875.2 + 102014 0.84 0.205639
Target:  5'- gGCGgUGGAcUGCAGCGUGCCGUUGa -3'
miRNA:   3'- gUGCaACCUcAUGUCGCACGGCAACg -5'
6769 3' -52.4 NC_001875.2 + 13801 0.66 0.978711
Target:  5'- uGCGggUGGc--GCGGCGuUGCCGUcGCa -3'
miRNA:   3'- gUGCa-ACCucaUGUCGC-ACGGCAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.