Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6769 | 3' | -52.4 | NC_001875.2 | + | 123017 | 0.69 | 0.912005 |
Target: 5'- --aGUUGGuGUugGGCGcGCCGccUGCc -3' miRNA: 3'- gugCAACCuCAugUCGCaCGGCa-ACG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 2373 | 0.69 | 0.899209 |
Target: 5'- gCAUGUUGGAGUccgACAGCuGcGCCcagUGCc -3' miRNA: 3'- -GUGCAACCUCA---UGUCG-CaCGGca-ACG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 67245 | 0.69 | 0.892438 |
Target: 5'- ----------aGCGGCGUGCCGUUGCa -3' miRNA: 3'- gugcaaccucaUGUCGCACGGCAACG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 23841 | 0.69 | 0.883273 |
Target: 5'- gGCGggUGGGGUuaaagugcucgccaGCGGaCGUgcaGCCGUUGCu -3' miRNA: 3'- gUGCa-ACCUCA--------------UGUC-GCA---CGGCAACG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 119534 | 0.7 | 0.878907 |
Target: 5'- gCGCGUUGaccacgcacacgGCGGCGUGCCGgcUGCa -3' miRNA: 3'- -GUGCAACcuca--------UGUCGCACGGCa-ACG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 27803 | 0.7 | 0.862967 |
Target: 5'- --gGUUGGGGUugAuGCGgcauugGCCGUUGg -3' miRNA: 3'- gugCAACCUCAugU-CGCa-----CGGCAACg -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 35776 | 0.7 | 0.838515 |
Target: 5'- gCGCGUUGuccaUAguGCGUGCCGgUGCg -3' miRNA: 3'- -GUGCAACcuc-AUguCGCACGGCaACG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 51755 | 0.71 | 0.812263 |
Target: 5'- aCGCGaUGGAGUGCAagGUGCCGccaaagGCg -3' miRNA: 3'- -GUGCaACCUCAUGUcgCACGGCaa----CG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 113601 | 0.71 | 0.803151 |
Target: 5'- gGCGUUcGAGUcgGCGGCGgGCCGcgGCg -3' miRNA: 3'- gUGCAAcCUCA--UGUCGCaCGGCaaCG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 88348 | 0.72 | 0.774863 |
Target: 5'- gGCGUcaaGGuGUGCAGCGUGCaCGg-GCa -3' miRNA: 3'- gUGCAa--CCuCAUGUCGCACG-GCaaCG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 121426 | 0.72 | 0.765149 |
Target: 5'- aAUGUUGGguAGUGCAGCGggUGCCGcgccacgGCg -3' miRNA: 3'- gUGCAACC--UCAUGUCGC--ACGGCaa-----CG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 121142 | 0.72 | 0.755308 |
Target: 5'- gGCGUUcGAGcGgGGCGUccaGCCGUUGCg -3' miRNA: 3'- gUGCAAcCUCaUgUCGCA---CGGCAACG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 86235 | 0.74 | 0.683743 |
Target: 5'- -gUGUUGGAGUGCuGCGcGCCGgaGUc -3' miRNA: 3'- guGCAACCUCAUGuCGCaCGGCaaCG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 49969 | 0.74 | 0.673258 |
Target: 5'- gCACGccgUGGAGUACAcuccCGUGUCGUUGa -3' miRNA: 3'- -GUGCa--ACCUCAUGUc---GCACGGCAACg -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 127998 | 0.75 | 0.588855 |
Target: 5'- aCAUGUUGGAGgcUGCGGcCGcGCCGgcgUGCg -3' miRNA: 3'- -GUGCAACCUC--AUGUC-GCaCGGCa--ACG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 105842 | 0.76 | 0.53691 |
Target: 5'- gGCuGUUGGGGUcCAGCGagccGCCGUUGUa -3' miRNA: 3'- gUG-CAACCUCAuGUCGCa---CGGCAACG- -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 102014 | 0.84 | 0.205639 |
Target: 5'- gGCGgUGGAcUGCAGCGUGCCGUUGa -3' miRNA: 3'- gUGCaACCUcAUGUCGCACGGCAACg -5' |
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6769 | 3' | -52.4 | NC_001875.2 | + | 91341 | 1.12 | 0.003266 |
Target: 5'- uCACGUUGGAGUACAGCGUGCCGUUGCg -3' miRNA: 3'- -GUGCAACCUCAUGUCGCACGGCAACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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