miRNA display CGI


Results 21 - 40 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6769 5' -64.4 NC_001875.2 + 122541 0.66 0.502471
Target:  5'- uGCGUCCGGCGCgCAgugcaCAUGUauaUCGGGg -3'
miRNA:   3'- -UGCGGGCCGUG-GUg----GUGCGgg-AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 90391 0.66 0.502471
Target:  5'- cGCGCcgcaaCCGGCGCCugUGCGCgCgcagCGGc -3'
miRNA:   3'- -UGCG-----GGCCGUGGugGUGCGgGa---GCCc -5'
6769 5' -64.4 NC_001875.2 + 88089 0.66 0.499731
Target:  5'- aACGCCCGcGCagcagccaaGCCAgCCaACGCCCguuuccaauuacagUUGGGa -3'
miRNA:   3'- -UGCGGGC-CG---------UGGU-GG-UGCGGG--------------AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 90032 0.66 0.493362
Target:  5'- -gGCCgCGGCGCCGgCGCGCgugCCggCGGa -3'
miRNA:   3'- ugCGG-GCCGUGGUgGUGCG---GGa-GCCc -5'
6769 5' -64.4 NC_001875.2 + 125910 0.66 0.493362
Target:  5'- cGCGCCCaccugcgcGGCGCUACCcaACGCCaugcCGGc -3'
miRNA:   3'- -UGCGGG--------CCGUGGUGG--UGCGGga--GCCc -5'
6769 5' -64.4 NC_001875.2 + 9085 0.67 0.487933
Target:  5'- uGCGCCUguGGCGagucggcgcuaaaccCCGCCACGaaCUCGGa -3'
miRNA:   3'- -UGCGGG--CCGU---------------GGUGGUGCggGAGCCc -5'
6769 5' -64.4 NC_001875.2 + 39325 0.67 0.484329
Target:  5'- cGCGCCgGGCGCgCACgaGCGCCCg---- -3'
miRNA:   3'- -UGCGGgCCGUG-GUGg-UGCGGGagccc -5'
6769 5' -64.4 NC_001875.2 + 113660 0.67 0.484329
Target:  5'- uACGCCCgccGGCACCGCCACaGUgg-CGGc -3'
miRNA:   3'- -UGCGGG---CCGUGGUGGUG-CGggaGCCc -5'
6769 5' -64.4 NC_001875.2 + 128695 0.67 0.475376
Target:  5'- cCGCCCGaCGCCGcguCCGCGCag-CGGGc -3'
miRNA:   3'- uGCGGGCcGUGGU---GGUGCGggaGCCC- -5'
6769 5' -64.4 NC_001875.2 + 34075 0.67 0.475376
Target:  5'- uCGUCCGuuGCCGCCACGCgCUUGu- -3'
miRNA:   3'- uGCGGGCcgUGGUGGUGCGgGAGCcc -5'
6769 5' -64.4 NC_001875.2 + 98808 0.67 0.475376
Target:  5'- -gGCgCGGCGcCCGCCGCGCUgcgCUUaaGGGg -3'
miRNA:   3'- ugCGgGCCGU-GGUGGUGCGG---GAG--CCC- -5'
6769 5' -64.4 NC_001875.2 + 90966 0.67 0.475376
Target:  5'- aGCGCgCGuGCACCAggaUgGCGCCCgCGGu -3'
miRNA:   3'- -UGCGgGC-CGUGGU---GgUGCGGGaGCCc -5'
6769 5' -64.4 NC_001875.2 + 98324 0.67 0.466506
Target:  5'- uCGCCCGGCAa-GCCGCGCUgcguguacaaUCGGu -3'
miRNA:   3'- uGCGGGCCGUggUGGUGCGGg---------AGCCc -5'
6769 5' -64.4 NC_001875.2 + 13390 0.67 0.466506
Target:  5'- uACGCaCGGCACCAggCGCGCUUgcaCGGGc -3'
miRNA:   3'- -UGCGgGCCGUGGUg-GUGCGGGa--GCCC- -5'
6769 5' -64.4 NC_001875.2 + 2675 0.67 0.466506
Target:  5'- gGCGCCUGGgGCaACUGCGgCgCCUCGGc -3'
miRNA:   3'- -UGCGGGCCgUGgUGGUGC-G-GGAGCCc -5'
6769 5' -64.4 NC_001875.2 + 99367 0.67 0.465624
Target:  5'- cGCGCCCGccaaguggccaaaGCGCCGCaccggcgGCGCCagCGGGu -3'
miRNA:   3'- -UGCGGGC-------------CGUGGUGg------UGCGGgaGCCC- -5'
6769 5' -64.4 NC_001875.2 + 10375 0.67 0.463862
Target:  5'- -gGCCUGGCcgaaaacuuugaacGCCGCCGCGCCguggCGcGGc -3'
miRNA:   3'- ugCGGGCCG--------------UGGUGGUGCGGga--GC-CC- -5'
6769 5' -64.4 NC_001875.2 + 13529 0.67 0.457723
Target:  5'- aGCGCgCGGCcgGCCGCCuCGaCCCugUCGGc -3'
miRNA:   3'- -UGCGgGCCG--UGGUGGuGC-GGG--AGCCc -5'
6769 5' -64.4 NC_001875.2 + 61507 0.67 0.457723
Target:  5'- -gGCUCGGCGCCGcaguCCGCGUgCUCGc- -3'
miRNA:   3'- ugCGGGCCGUGGU----GGUGCGgGAGCcc -5'
6769 5' -64.4 NC_001875.2 + 130611 0.67 0.45685
Target:  5'- uGCGCCgGGCGucgggauCCugCACGCCgaUCaGGa -3'
miRNA:   3'- -UGCGGgCCGU-------GGugGUGCGGg-AGcCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.