miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6770 5' -50.9 NC_001875.2 + 18143 0.73 0.836442
Target:  5'- gCCAcUGUgaguuacUGGUGCGGcGCGCGCGAc-- -3'
miRNA:   3'- -GGU-ACA-------ACUACGCCaUGCGCGCUucc -5'
6770 5' -50.9 NC_001875.2 + 92603 0.66 0.994694
Target:  5'- gCCGcUGUgcaGA-GUGGUGgGCGCGAGcGGc -3'
miRNA:   3'- -GGU-ACAa--CUaCGCCAUgCGCGCUU-CC- -5'
6770 5' -50.9 NC_001875.2 + 63865 0.66 0.994694
Target:  5'- gCGUGaUGucaucauuuUGCGGUuguugcgaaaaGCGCGCGcAAGGu -3'
miRNA:   3'- gGUACaACu--------ACGCCA-----------UGCGCGC-UUCC- -5'
6770 5' -50.9 NC_001875.2 + 39317 0.66 0.993848
Target:  5'- aCCGUGccgGcgGC-GUGCGCGCGcugcAGGc -3'
miRNA:   3'- -GGUACaa-CuaCGcCAUGCGCGCu---UCC- -5'
6770 5' -50.9 NC_001875.2 + 26892 0.66 0.99259
Target:  5'- aUAUGUUGG-GCGuUACGCGCGcguucugcuggcgcAGGGu -3'
miRNA:   3'- gGUACAACUaCGCcAUGCGCGC--------------UUCC- -5'
6770 5' -50.9 NC_001875.2 + 10060 0.66 0.989326
Target:  5'- gCCGUGcaggaUGaAUGCGGU-CGUGUGGAGc -3'
miRNA:   3'- -GGUACa----AC-UACGCCAuGCGCGCUUCc -5'
6770 5' -50.9 NC_001875.2 + 96027 0.67 0.984489
Target:  5'- cCCAUGcUG-UGCGugGCGCGCGAGu- -3'
miRNA:   3'- -GGUACaACuACGCcaUGCGCGCUUcc -5'
6770 5' -50.9 NC_001875.2 + 43286 0.68 0.979085
Target:  5'- aCAUGUaggggauguuaaauaUGGgguaGCGGcGCGCGCGcGGGu -3'
miRNA:   3'- gGUACA---------------ACUa---CGCCaUGCGCGCuUCC- -5'
6770 5' -50.9 NC_001875.2 + 124891 0.68 0.970058
Target:  5'- aCGUGUUGAggcGCGGguuuuguuguaGCGCGCGGu-- -3'
miRNA:   3'- gGUACAACUa--CGCCa----------UGCGCGCUucc -5'
6770 5' -50.9 NC_001875.2 + 84234 0.72 0.869471
Target:  5'- gCCAcUGUUGA-GCGGcaaACGCGCGccGGc -3'
miRNA:   3'- -GGU-ACAACUaCGCCa--UGCGCGCuuCC- -5'
6770 5' -50.9 NC_001875.2 + 79715 0.72 0.884234
Target:  5'- --uUGgcGAUGUGGUACGUGCGcAGa -3'
miRNA:   3'- gguACaaCUACGCCAUGCGCGCuUCc -5'
6770 5' -50.9 NC_001875.2 + 67141 0.71 0.891263
Target:  5'- gCCGUGUUGcUGCGGcugucUGCGCGgGAc-- -3'
miRNA:   3'- -GGUACAACuACGCC-----AUGCGCgCUucc -5'
6770 5' -50.9 NC_001875.2 + 19108 0.7 0.943367
Target:  5'- gCCGUGU---UGCuGUGCGCGCGAc-- -3'
miRNA:   3'- -GGUACAacuACGcCAUGCGCGCUucc -5'
6770 5' -50.9 NC_001875.2 + 15706 0.69 0.9636
Target:  5'- cCCAUGuUUGAcUGCGGcgagGUGUGCGAGGa -3'
miRNA:   3'- -GGUAC-AACU-ACGCCa---UGCGCGCUUCc -5'
6770 5' -50.9 NC_001875.2 + 45966 0.69 0.9636
Target:  5'- aCCAgg-UGcgGCGGUACcccaGCGUGAcGGa -3'
miRNA:   3'- -GGUacaACuaCGCCAUG----CGCGCUuCC- -5'
6770 5' -50.9 NC_001875.2 + 91134 0.66 0.994694
Target:  5'- ---aGUUGAUGaCGc-GCGCGCGgcGGu -3'
miRNA:   3'- gguaCAACUAC-GCcaUGCGCGCuuCC- -5'
6770 5' -50.9 NC_001875.2 + 70027 0.75 0.754197
Target:  5'- gCCGUGUUGGcauugauugUGCGGU-CGCuGCGAcGGa -3'
miRNA:   3'- -GGUACAACU---------ACGCCAuGCG-CGCUuCC- -5'
6770 5' -50.9 NC_001875.2 + 93992 0.69 0.9636
Target:  5'- -aAUGUU--UGUGGUGCGCGCGcAGc -3'
miRNA:   3'- ggUACAAcuACGCCAUGCGCGCuUCc -5'
6770 5' -50.9 NC_001875.2 + 21358 0.68 0.96694
Target:  5'- gCCGUGUgcuUGAcGCGGUACuuGCGGuuGGc -3'
miRNA:   3'- -GGUACA---ACUaCGCCAUGcgCGCUu-CC- -5'
6770 5' -50.9 NC_001875.2 + 63120 0.68 0.975652
Target:  5'- uCCAUGg-GAUaGCGGccggGCGCGCGGccggcgcacGGGu -3'
miRNA:   3'- -GGUACaaCUA-CGCCa---UGCGCGCU---------UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.