miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6771 3' -51.5 NC_001875.2 + 19856 0.66 0.982714
Target:  5'- gCAAGACuCGGCcGCGUcgcggCGCGGGc--- -3'
miRNA:   3'- -GUUCUG-GCCGuCGUAa----GCGCUCaaag -5'
6771 3' -51.5 NC_001875.2 + 95940 0.66 0.982714
Target:  5'- aAGGACCGGC-GCAUcCaaGAGUUg- -3'
miRNA:   3'- gUUCUGGCCGuCGUAaGcgCUCAAag -5'
6771 3' -51.5 NC_001875.2 + 16004 0.66 0.980574
Target:  5'- --uGACCGGCuGCugggcCGCGAGg--- -3'
miRNA:   3'- guuCUGGCCGuCGuaa--GCGCUCaaag -5'
6771 3' -51.5 NC_001875.2 + 131751 0.66 0.97571
Target:  5'- -uGGGCCGGCGGCGgaucgggcggCGCGucauuGGUgUCg -3'
miRNA:   3'- guUCUGGCCGUCGUaa--------GCGC-----UCAaAG- -5'
6771 3' -51.5 NC_001875.2 + 17820 0.66 0.97571
Target:  5'- -uGGACCGcGCGGCcgccaugCGCGAGg--- -3'
miRNA:   3'- guUCUGGC-CGUCGuaa----GCGCUCaaag -5'
6771 3' -51.5 NC_001875.2 + 99394 0.66 0.97571
Target:  5'- ---cACCGGCGGCGccaGCGGGUcgCg -3'
miRNA:   3'- guucUGGCCGUCGUaagCGCUCAaaG- -5'
6771 3' -51.5 NC_001875.2 + 39666 0.67 0.963412
Target:  5'- -uGGGCCGGCGGCg--CGCGGc---- -3'
miRNA:   3'- guUCUGGCCGUCGuaaGCGCUcaaag -5'
6771 3' -51.5 NC_001875.2 + 55420 0.67 0.95976
Target:  5'- --uGACCuGCAGCAauUUCGCgugGAGUUUa -3'
miRNA:   3'- guuCUGGcCGUCGU--AAGCG---CUCAAAg -5'
6771 3' -51.5 NC_001875.2 + 50539 0.67 0.955863
Target:  5'- gGAGgcgccGCCGGCGGCGcgcgugucuUUUGCGGGgcaUUCg -3'
miRNA:   3'- gUUC-----UGGCCGUCGU---------AAGCGCUCa--AAG- -5'
6771 3' -51.5 NC_001875.2 + 39176 0.68 0.951719
Target:  5'- -cGGGCCGGCGGUug-CGUGGcGUUUa -3'
miRNA:   3'- guUCUGGCCGUCGuaaGCGCU-CAAAg -5'
6771 3' -51.5 NC_001875.2 + 5508 0.69 0.915472
Target:  5'- --cGACCGGC-GCAcgCGCGcAGUUUa -3'
miRNA:   3'- guuCUGGCCGuCGUaaGCGC-UCAAAg -5'
6771 3' -51.5 NC_001875.2 + 24505 0.69 0.902761
Target:  5'- gCAAGAUCGGC-GCA--CGCGGGUa-- -3'
miRNA:   3'- -GUUCUGGCCGuCGUaaGCGCUCAaag -5'
6771 3' -51.5 NC_001875.2 + 31740 0.7 0.889023
Target:  5'- --uGGCCcGCGGCGUUugagCGCGAGUUUg -3'
miRNA:   3'- guuCUGGcCGUCGUAA----GCGCUCAAAg -5'
6771 3' -51.5 NC_001875.2 + 100990 0.7 0.889023
Target:  5'- -cAGGCC-GCGGCGUUUGCGgcGGUUUUg -3'
miRNA:   3'- guUCUGGcCGUCGUAAGCGC--UCAAAG- -5'
6771 3' -51.5 NC_001875.2 + 56453 0.7 0.866563
Target:  5'- uGAGGCCGGUGGCGggguccgcgCGCGuGUUggUCa -3'
miRNA:   3'- gUUCUGGCCGUCGUaa-------GCGCuCAA--AG- -5'
6771 3' -51.5 NC_001875.2 + 38317 0.73 0.758042
Target:  5'- aCAAGGCCGGCGGCAUgcaagaCGUGcuguGGUUg- -3'
miRNA:   3'- -GUUCUGGCCGUCGUAa-----GCGC----UCAAag -5'
6771 3' -51.5 NC_001875.2 + 126941 0.73 0.717093
Target:  5'- --cGACCGGgAGCAgcugcggCGCGAGUUa- -3'
miRNA:   3'- guuCUGGCCgUCGUaa-----GCGCUCAAag -5'
6771 3' -51.5 NC_001875.2 + 50830 0.73 0.717093
Target:  5'- -uAGACCGGCAGCAacgcgUCGCGcGccuuUUUCa -3'
miRNA:   3'- guUCUGGCCGUCGUa----AGCGCuC----AAAG- -5'
6771 3' -51.5 NC_001875.2 + 90085 1.1 0.005064
Target:  5'- aCAAGACCGGCAGCAUUCGCGAGUUUCu -3'
miRNA:   3'- -GUUCUGGCCGUCGUAAGCGCUCAAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.