miRNA display CGI


Results 21 - 40 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6771 5' -60.4 NC_001875.2 + 57021 0.66 0.701354
Target:  5'- aUGGAGUGUaacGCGCCGCuggGC-GCGUCGu -3'
miRNA:   3'- aGCCUUACGc--UGCGGCG---CGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 62473 0.66 0.701354
Target:  5'- gUGGAcgGCG-CGCagcggGCGCA-CGCCGc -3'
miRNA:   3'- aGCCUuaCGCuGCGg----CGCGUcGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 3000 0.66 0.701354
Target:  5'- uUCGGGcggguugaaGUGCGcguCGCCGUGCAaguuguacaCGCCGu -3'
miRNA:   3'- -AGCCU---------UACGCu--GCGGCGCGUc--------GCGGC- -5'
6771 5' -60.4 NC_001875.2 + 77030 0.66 0.701354
Target:  5'- uUCGGGcu-CGGCaGCCGCGUcgcggugcuAGUGCCGc -3'
miRNA:   3'- -AGCCUuacGCUG-CGGCGCG---------UCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 50010 0.66 0.701354
Target:  5'- gCGGu-UGgGGCG-CGCGUGGuCGCCGg -3'
miRNA:   3'- aGCCuuACgCUGCgGCGCGUC-GCGGC- -5'
6771 5' -60.4 NC_001875.2 + 12767 0.66 0.701354
Target:  5'- gCGGuuguUGUccagccggGGCGCCGCGCAcauGCGCaCGc -3'
miRNA:   3'- aGCCuu--ACG--------CUGCGGCGCGU---CGCG-GC- -5'
6771 5' -60.4 NC_001875.2 + 50241 0.66 0.701354
Target:  5'- aUGG-AUG-GugGUCuCGCAGCGCCa -3'
miRNA:   3'- aGCCuUACgCugCGGcGCGUCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 18268 0.66 0.701354
Target:  5'- cUGGcccaaugGCG-CGCCGUGCGcgaccGCGCCGu -3'
miRNA:   3'- aGCCuua----CGCuGCGGCGCGU-----CGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 87821 0.66 0.700374
Target:  5'- cCGGGcUGCGguacagcACGCUGgGCacGGCGCCc -3'
miRNA:   3'- aGCCUuACGC-------UGCGGCgCG--UCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 98471 0.66 0.699393
Target:  5'- aCGGccugcuucuuuUGCGACuGCCGCGUgcgugauuGGCuGCCGg -3'
miRNA:   3'- aGCCuu---------ACGCUG-CGGCGCG--------UCG-CGGC- -5'
6771 5' -60.4 NC_001875.2 + 125352 0.66 0.69153
Target:  5'- gUUGGc--GCGGCacuCCGCGUugGGCGCCGu -3'
miRNA:   3'- -AGCCuuaCGCUGc--GGCGCG--UCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 32782 0.66 0.69153
Target:  5'- cUCGcGcgGCGugGgCGgGCGccGCGCCGg -3'
miRNA:   3'- -AGCcUuaCGCugCgGCgCGU--CGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 55536 0.66 0.69153
Target:  5'- cUCGGAAUGCGACGCgcaugaacaCGgGCA-UGUCc -3'
miRNA:   3'- -AGCCUUACGCUGCG---------GCgCGUcGCGGc -5'
6771 5' -60.4 NC_001875.2 + 114966 0.66 0.69153
Target:  5'- gUCGauaGAA-GCGgucGCGCUG-GCGGCGCCGa -3'
miRNA:   3'- -AGC---CUUaCGC---UGCGGCgCGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 52350 0.66 0.681659
Target:  5'- ---aAGUGCGGCgcguGCCGCGCcAGCGUCc -3'
miRNA:   3'- agccUUACGCUG----CGGCGCG-UCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 108031 0.66 0.681659
Target:  5'- aCGGcgcgccCGACGCCGCGgAGCGacaCGu -3'
miRNA:   3'- aGCCuuac--GCUGCGGCGCgUCGCg--GC- -5'
6771 5' -60.4 NC_001875.2 + 126321 0.66 0.681659
Target:  5'- aCGGcg-GcCGGCGUaaacugCGCGCGuGCGCCGg -3'
miRNA:   3'- aGCCuuaC-GCUGCG------GCGCGU-CGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 43019 0.66 0.681659
Target:  5'- aUUGcGAGUGCcGCGCgC-CGCGGCGCgCGg -3'
miRNA:   3'- -AGC-CUUACGcUGCG-GcGCGUCGCG-GC- -5'
6771 5' -60.4 NC_001875.2 + 89242 0.66 0.68067
Target:  5'- gUUGGcGGUGCccagcgccgagcuGACGCgCGCGU-GCGCCGa -3'
miRNA:   3'- -AGCC-UUACG-------------CUGCG-GCGCGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 30085 0.66 0.675718
Target:  5'- aUGGAcgauucuuuguugcuGUGCGcgcuguACGCCGUGaCGGUGCUGa -3'
miRNA:   3'- aGCCU---------------UACGC------UGCGGCGC-GUCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.