miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6772 5' -58.5 NC_001875.2 + 113599 0.66 0.770983
Target:  5'- aCGGCGUucgagucGGCGGCgGGcCGCgGCGGCa -3'
miRNA:   3'- cGCCGCG-------CCGUUGaCCuGCG-CGUUGa -5'
6772 5' -58.5 NC_001875.2 + 33034 0.66 0.770983
Target:  5'- cGCaGCGCGGCGggcgccgcgccgcGC-GGAuagcguucCGCGCGGCUc -3'
miRNA:   3'- -CGcCGCGCCGU-------------UGaCCU--------GCGCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 99721 0.66 0.766303
Target:  5'- uGCGGCGCucgcaaguGcGCGccuugucgugcucguGCUGuGACGCGCAAg- -3'
miRNA:   3'- -CGCCGCG--------C-CGU---------------UGAC-CUGCGCGUUga -5'
6772 5' -58.5 NC_001875.2 + 17788 0.66 0.766303
Target:  5'- cGUGGCGUacGcGCAGCccgcgugcuaccaucUGGAcCGCGCGGCc -3'
miRNA:   3'- -CGCCGCG--C-CGUUG---------------ACCU-GCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 81701 0.66 0.762537
Target:  5'- -aGGCGCGcCAggcGCUGGAagaGCGCuACg -3'
miRNA:   3'- cgCCGCGCcGU---UGACCUg--CGCGuUGa -5'
6772 5' -58.5 NC_001875.2 + 63125 0.66 0.762537
Target:  5'- -gGGauaGCGGCc---GGGCGCGCGGCc -3'
miRNA:   3'- cgCCg--CGCCGuugaCCUGCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 13018 0.66 0.762537
Target:  5'- cGCuucGCGCGGCAGCUuugcaaaaaGCGCGCAAa- -3'
miRNA:   3'- -CGc--CGCGCCGUUGAcc-------UGCGCGUUga -5'
6772 5' -58.5 NC_001875.2 + 50240 0.66 0.761593
Target:  5'- cGCGGCGCGGCAucuucuccuGCUcauacagcguaucGGGCagGUGguACa -3'
miRNA:   3'- -CGCCGCGCCGU---------UGA-------------CCUG--CGCguUGa -5'
6772 5' -58.5 NC_001875.2 + 32132 0.66 0.756856
Target:  5'- uGCGaGCGCcgcauagcgcucaacGGCGGCgaaGACGCGCuGCUc -3'
miRNA:   3'- -CGC-CGCG---------------CCGUUGac-CUGCGCGuUGA- -5'
6772 5' -58.5 NC_001875.2 + 11081 0.66 0.756856
Target:  5'- cGUGGCGCGcGCc-CUGGACacggccgccgucucgGCGCcGCa -3'
miRNA:   3'- -CGCCGCGC-CGuuGACCUG---------------CGCGuUGa -5'
6772 5' -58.5 NC_001875.2 + 124540 0.66 0.753046
Target:  5'- uGCGGCGagucgggguCGGCGGCgGGGuCGCuuugGCGGCa -3'
miRNA:   3'- -CGCCGC---------GCCGUUGaCCU-GCG----CGUUGa -5'
6772 5' -58.5 NC_001875.2 + 40469 0.66 0.753046
Target:  5'- -gGGCGUGGUggUgccGGGCgucaugucGCGCAACg -3'
miRNA:   3'- cgCCGCGCCGuuGa--CCUG--------CGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 19479 0.66 0.753046
Target:  5'- -gGGCGCuGguGCUGGcggcuCGgGCAGCUc -3'
miRNA:   3'- cgCCGCGcCguUGACCu----GCgCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 28669 0.66 0.753046
Target:  5'- gGCGGCGUgGGCGACaUGGcguACGUGUuguuuAACg -3'
miRNA:   3'- -CGCCGCG-CCGUUG-ACC---UGCGCG-----UUGa -5'
6772 5' -58.5 NC_001875.2 + 98923 0.66 0.753046
Target:  5'- cGCGGCGcCGGUuGCgcg-UGCGCGACg -3'
miRNA:   3'- -CGCCGC-GCCGuUGaccuGCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 59106 0.66 0.753046
Target:  5'- -aGGCuGaCGGCGucGCUGGccgACGCGCAAg- -3'
miRNA:   3'- cgCCG-C-GCCGU--UGACC---UGCGCGUUga -5'
6772 5' -58.5 NC_001875.2 + 2294 0.66 0.753046
Target:  5'- uGCGcGCGCGcCG--UGGccGCGCGCAGCUc -3'
miRNA:   3'- -CGC-CGCGCcGUugACC--UGCGCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 69196 0.66 0.750177
Target:  5'- cGCGuGCGCGGCGccgacggccaguacGCUuguucGGGCGaCGCGcGCUg -3'
miRNA:   3'- -CGC-CGCGCCGU--------------UGA-----CCUGC-GCGU-UGA- -5'
6772 5' -58.5 NC_001875.2 + 70338 0.67 0.743449
Target:  5'- cGCGGacuGCGGCGccgaGCcGG-CGCGCAAa- -3'
miRNA:   3'- -CGCCg--CGCCGU----UGaCCuGCGCGUUga -5'
6772 5' -58.5 NC_001875.2 + 102424 0.67 0.743449
Target:  5'- -gGGcCGCGGCGACgaGG-UGCGCuGCg -3'
miRNA:   3'- cgCC-GCGCCGUUGa-CCuGCGCGuUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.