miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6773 3' -52.9 NC_001875.2 + 1658 0.66 0.96081
Target:  5'- gGUGCgaacgcucucgaaCGgCGCGUGCUAUUUuuAGCGg -3'
miRNA:   3'- gCACG-------------GCgGCGCGCGAUAAAcuUUGC- -5'
6773 3' -52.9 NC_001875.2 + 1784 0.66 0.96081
Target:  5'- gGUGCgaacgcucucgaaCGgCGCGUGCUAUUUuuAGCGg -3'
miRNA:   3'- gCACG-------------GCgGCGCGCGAUAAAcuUUGC- -5'
6773 3' -52.9 NC_001875.2 + 1526 0.66 0.96081
Target:  5'- gGUGCgggcgcucucgaaCGgCGCGUGCUAUUUuuAGCGg -3'
miRNA:   3'- gCACG-------------GCgGCGCGCGAUAAAcuUUGC- -5'
6773 3' -52.9 NC_001875.2 + 46555 0.66 0.957448
Target:  5'- cCGcGCCGCC-CGCGCaaaccgUGUUcGggGCGc -3'
miRNA:   3'- -GCaCGGCGGcGCGCG------AUAAaCuuUGC- -5'
6773 3' -52.9 NC_001875.2 + 19225 0.66 0.957448
Target:  5'- ---aCCGCCGUGCGCgaGUUUguggaaGAGACGg -3'
miRNA:   3'- gcacGGCGGCGCGCGa-UAAA------CUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 48285 0.66 0.957448
Target:  5'- uGUGuCCGCCGCGUGCcAUUg------ -3'
miRNA:   3'- gCAC-GGCGGCGCGCGaUAAacuuugc -5'
6773 3' -52.9 NC_001875.2 + 40886 0.66 0.957448
Target:  5'- gGUGCa--CGCGCGCUucgcgGAGAUGa -3'
miRNA:   3'- gCACGgcgGCGCGCGAuaaa-CUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 110573 0.66 0.957448
Target:  5'- uCGUGCucguagccgCGCCGCGCGCgcgccUGGAcCa -3'
miRNA:   3'- -GCACG---------GCGGCGCGCGauaa-ACUUuGc -5'
6773 3' -52.9 NC_001875.2 + 85783 0.66 0.957063
Target:  5'- --cGCCGCCGUuucuGCGCcGUUcauguugUGAAGCa -3'
miRNA:   3'- gcaCGGCGGCG----CGCGaUAA-------ACUUUGc -5'
6773 3' -52.9 NC_001875.2 + 59518 0.67 0.953487
Target:  5'- uGUGCCGCCGCaaaaacGCGCacUUU--AACGu -3'
miRNA:   3'- gCACGGCGGCG------CGCGauAAAcuUUGC- -5'
6773 3' -52.9 NC_001875.2 + 64906 0.67 0.953487
Target:  5'- --aGCUGUCGCGC-CUcgUUGAuGCGc -3'
miRNA:   3'- gcaCGGCGGCGCGcGAuaAACUuUGC- -5'
6773 3' -52.9 NC_001875.2 + 83418 0.67 0.953487
Target:  5'- --cGCCGCaaaacuGCGCGCUGccguucaaUUGAAGCa -3'
miRNA:   3'- gcaCGGCGg-----CGCGCGAUa-------AACUUUGc -5'
6773 3' -52.9 NC_001875.2 + 19109 0.67 0.953487
Target:  5'- cCGUGuuGCUGUGCGCgc---GAcGCGc -3'
miRNA:   3'- -GCACggCGGCGCGCGauaaaCUuUGC- -5'
6773 3' -52.9 NC_001875.2 + 94786 0.67 0.953487
Target:  5'- gCGUgGCCGCgucCGCGCGCg---UGcAGCGc -3'
miRNA:   3'- -GCA-CGGCG---GCGCGCGauaaACuUUGC- -5'
6773 3' -52.9 NC_001875.2 + 113392 0.67 0.953487
Target:  5'- uGUGCCGCgGCGUugcguagucGCgaaugUGAAACc -3'
miRNA:   3'- gCACGGCGgCGCG---------CGauaa-ACUUUGc -5'
6773 3' -52.9 NC_001875.2 + 127430 0.67 0.950995
Target:  5'- -aUGCCGCCGUGCaugagcaagacgaugGCcgAUUUGAGcaGCGc -3'
miRNA:   3'- gcACGGCGGCGCG---------------CGa-UAAACUU--UGC- -5'
6773 3' -52.9 NC_001875.2 + 109843 0.67 0.949285
Target:  5'- aGUGCCggcggauuuGCUGCGCGC-GUUUGccAAGCu -3'
miRNA:   3'- gCACGG---------CGGCGCGCGaUAAAC--UUUGc -5'
6773 3' -52.9 NC_001875.2 + 40207 0.67 0.949285
Target:  5'- --aGCUGCUGCGCgGCUAUUcGgcGCa -3'
miRNA:   3'- gcaCGGCGGCGCG-CGAUAAaCuuUGc -5'
6773 3' -52.9 NC_001875.2 + 31139 0.67 0.949285
Target:  5'- uGUGCaugcuuaacgCGCCGCGCGCg----GAGuCGg -3'
miRNA:   3'- gCACG----------GCGGCGCGCGauaaaCUUuGC- -5'
6773 3' -52.9 NC_001875.2 + 70631 0.67 0.947977
Target:  5'- aCGUgGCCGUuaaacucuguuuaaCGCGCGCggauUUUGAaAACGa -3'
miRNA:   3'- -GCA-CGGCG--------------GCGCGCGau--AAACU-UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.