miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6773 5' -50.2 NC_001875.2 + 21739 0.67 0.991325
Target:  5'- -gCGUucUUGCuc-UGGCCGCGCGugGCGGc -3'
miRNA:   3'- caGCA--AAUGcaaACUGGCGCGC--UGCC- -5'
6773 5' -50.2 NC_001875.2 + 82032 0.67 0.991325
Target:  5'- -aCGggUACGUg-GACauCGCGGCGGg -3'
miRNA:   3'- caGCaaAUGCAaaCUGgcGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 19041 0.67 0.990965
Target:  5'- cUCGaUUAUGU--GGCCGCGCucgaggugaacucgGACGGg -3'
miRNA:   3'- cAGCaAAUGCAaaCUGGCGCG--------------CUGCC- -5'
6773 5' -50.2 NC_001875.2 + 9706 0.67 0.988695
Target:  5'- cGUCGUgcGCGcc-GGCCGCGCcGCGc -3'
miRNA:   3'- -CAGCAaaUGCaaaCUGGCGCGcUGCc -5'
6773 5' -50.2 NC_001875.2 + 49989 0.67 0.988695
Target:  5'- -cCGUgu-CG-UUGACCGUGCgGAUGGu -3'
miRNA:   3'- caGCAaauGCaAACUGGCGCG-CUGCC- -5'
6773 5' -50.2 NC_001875.2 + 106892 0.67 0.988102
Target:  5'- uUCGUUUgagcauucugucaaGCGUUUGcGCCGCguuuccgGCGACGa -3'
miRNA:   3'- cAGCAAA--------------UGCAAAC-UGGCG-------CGCUGCc -5'
6773 5' -50.2 NC_001875.2 + 85291 0.68 0.987167
Target:  5'- --gGUUUGCGcg-GGCgGCGCGggcGCGGg -3'
miRNA:   3'- cagCAAAUGCaaaCUGgCGCGC---UGCC- -5'
6773 5' -50.2 NC_001875.2 + 66094 0.68 0.985484
Target:  5'- -aCGaaUACGccgagGcCCGCGCGGCGGg -3'
miRNA:   3'- caGCaaAUGCaaa--CuGGCGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 358 0.68 0.981618
Target:  5'- uGUCGaucugcACG-UUGGCCGCGCGAUu- -3'
miRNA:   3'- -CAGCaaa---UGCaAACUGGCGCGCUGcc -5'
6773 5' -50.2 NC_001875.2 + 71925 0.68 0.981618
Target:  5'- cGUCGgcgaGCGccUUGACCGCGCGcuccGCGc -3'
miRNA:   3'- -CAGCaaa-UGCa-AACUGGCGCGC----UGCc -5'
6773 5' -50.2 NC_001875.2 + 41124 0.68 0.979417
Target:  5'- cGUCGUgucGCGcUUGACCG-GCGGCc- -3'
miRNA:   3'- -CAGCAaa-UGCaAACUGGCgCGCUGcc -5'
6773 5' -50.2 NC_001875.2 + 58044 0.68 0.979417
Target:  5'- cGUCGcgcaggUugGUUuugugcacgcUGACCGCGCugucGGCGGu -3'
miRNA:   3'- -CAGCaa----AugCAA----------ACUGGCGCG----CUGCC- -5'
6773 5' -50.2 NC_001875.2 + 104142 0.69 0.977027
Target:  5'- cUCGUUgUGCGgcucaaacGGCgGCGCGAUGGc -3'
miRNA:   3'- cAGCAA-AUGCaaa-----CUGgCGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 43526 0.69 0.974439
Target:  5'- cGUCGguggACGUgacGACCGCGguGCGGa -3'
miRNA:   3'- -CAGCaaa-UGCAaa-CUGGCGCgcUGCC- -5'
6773 5' -50.2 NC_001875.2 + 15003 0.69 0.974439
Target:  5'- --aGUUUGCGUgcugUGACUGUGcCGACa- -3'
miRNA:   3'- cagCAAAUGCAa---ACUGGCGC-GCUGcc -5'
6773 5' -50.2 NC_001875.2 + 101989 0.69 0.971645
Target:  5'- cGUUGUgcaUUGCGgc-GugCGCGgCGGCGGu -3'
miRNA:   3'- -CAGCA---AAUGCaaaCugGCGC-GCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 91121 0.69 0.971645
Target:  5'- -gUGUUgGCGUUguaguugaUGACgcgCGCGCGGCGGu -3'
miRNA:   3'- caGCAAaUGCAA--------ACUG---GCGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 59068 0.69 0.971645
Target:  5'- cGUCGgcaaACgGUUUGGCCGgCGCGgaaACGGu -3'
miRNA:   3'- -CAGCaaa-UG-CAAACUGGC-GCGC---UGCC- -5'
6773 5' -50.2 NC_001875.2 + 19938 0.69 0.968637
Target:  5'- -cCGUacACGgagcGGCCgGCGCGACGGu -3'
miRNA:   3'- caGCAaaUGCaaa-CUGG-CGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 48295 0.69 0.968637
Target:  5'- --aGUggGCGUguuugcGACUGCGCGACGc -3'
miRNA:   3'- cagCAaaUGCAaa----CUGGCGCGCUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.