miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6774 3' -55 NC_001875.2 + 2668 0.68 0.832676
Target:  5'- cGCCGGcG-GCGCCUgggGCaacUGCGgcGCCu -3'
miRNA:   3'- -UGGCC-CaCGCGGAa--CGc--AUGCuuUGG- -5'
6774 3' -55 NC_001875.2 + 3103 0.7 0.751451
Target:  5'- cGCCGGGgcGCGgCUcGCGgcgcagaccugggcgGCGAAGCCc -3'
miRNA:   3'- -UGGCCCa-CGCgGAaCGCa--------------UGCUUUGG- -5'
6774 3' -55 NC_001875.2 + 4535 0.67 0.893398
Target:  5'- cGCCGGcUGCGgUUccUGCGguUugGggGCCg -3'
miRNA:   3'- -UGGCCcACGCgGA--ACGC--AugCuuUGG- -5'
6774 3' -55 NC_001875.2 + 9024 0.7 0.76016
Target:  5'- cUCGGa--CGCCUUGCGUuuGGAGCCg -3'
miRNA:   3'- uGGCCcacGCGGAACGCAugCUUUGG- -5'
6774 3' -55 NC_001875.2 + 12780 0.74 0.516759
Target:  5'- aGCCGGG-GCGCCgcgcacaUGCGcACGccGGACCa -3'
miRNA:   3'- -UGGCCCaCGCGGa------ACGCaUGC--UUUGG- -5'
6774 3' -55 NC_001875.2 + 15731 0.71 0.680262
Target:  5'- uGCCGGGaaCGCUUgGaagaGUACGAAGCCc -3'
miRNA:   3'- -UGGCCCacGCGGAaCg---CAUGCUUUGG- -5'
6774 3' -55 NC_001875.2 + 19965 0.68 0.84099
Target:  5'- uCCGGccgGCGCCUcgccguugcUGaCGUGCGugGCCa -3'
miRNA:   3'- uGGCCca-CGCGGA---------AC-GCAUGCuuUGG- -5'
6774 3' -55 NC_001875.2 + 21328 0.66 0.929343
Target:  5'- uGCgCGGGgccCGCCUUGUugACGAGcagcGCCg -3'
miRNA:   3'- -UG-GCCCac-GCGGAACGcaUGCUU----UGG- -5'
6774 3' -55 NC_001875.2 + 22949 0.67 0.893398
Target:  5'- gACCGGGcgGCGCCa--UGUACGccuCCg -3'
miRNA:   3'- -UGGCCCa-CGCGGaacGCAUGCuuuGG- -5'
6774 3' -55 NC_001875.2 + 36981 0.66 0.929343
Target:  5'- ------cGCGCCUgGCGUACGugGCCg -3'
miRNA:   3'- uggcccaCGCGGAaCGCAUGCuuUGG- -5'
6774 3' -55 NC_001875.2 + 37128 0.69 0.779168
Target:  5'- cGCCGGcGUuuGCGUCUUuccGCGUGCGcaucGCCg -3'
miRNA:   3'- -UGGCC-CA--CGCGGAA---CGCAUGCuu--UGG- -5'
6774 3' -55 NC_001875.2 + 38552 0.66 0.912456
Target:  5'- gGCCGGGUugcuGCGUCggcgcgGCGUGCccauCCu -3'
miRNA:   3'- -UGGCCCA----CGCGGaa----CGCAUGcuuuGG- -5'
6774 3' -55 NC_001875.2 + 40179 0.66 0.929343
Target:  5'- cGCaUGGGcGUGCCguacGCGUACG--GCCa -3'
miRNA:   3'- -UG-GCCCaCGCGGaa--CGCAUGCuuUGG- -5'
6774 3' -55 NC_001875.2 + 42670 0.67 0.886573
Target:  5'- gGCUGauuUGCGCCa-GCGUgcACGAAACCg -3'
miRNA:   3'- -UGGCcc-ACGCGGaaCGCA--UGCUUUGG- -5'
6774 3' -55 NC_001875.2 + 42979 0.71 0.700665
Target:  5'- aGCaCGGuGUGCGUCUUGaUGUugGGcugGGCCa -3'
miRNA:   3'- -UG-GCC-CACGCGGAAC-GCAugCU---UUGG- -5'
6774 3' -55 NC_001875.2 + 45101 0.73 0.597727
Target:  5'- uGCUGcuuGUGCGCCUUGCuGUAuCGAAACa -3'
miRNA:   3'- -UGGCc--CACGCGGAACG-CAU-GCUUUGg -5'
6774 3' -55 NC_001875.2 + 47678 0.69 0.788474
Target:  5'- gGCCGcGGcGCGCCgcGCGUuucucaacGCGggGCa -3'
miRNA:   3'- -UGGC-CCaCGCGGaaCGCA--------UGCuuUGg -5'
6774 3' -55 NC_001875.2 + 49361 0.67 0.899988
Target:  5'- gGCCGuGGUGCaaCaUGCGgcgGCGguACCg -3'
miRNA:   3'- -UGGC-CCACGcgGaACGCa--UGCuuUGG- -5'
6774 3' -55 NC_001875.2 + 49862 0.7 0.750478
Target:  5'- gGCCGGc-GCGCCUUGCcgGCGccAACCa -3'
miRNA:   3'- -UGGCCcaCGCGGAACGcaUGCu-UUGG- -5'
6774 3' -55 NC_001875.2 + 57338 0.68 0.864743
Target:  5'- -gCGGcaGCGCUgcGCGcgGCGAAACCg -3'
miRNA:   3'- ugGCCcaCGCGGaaCGCa-UGCUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.