miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6775 3' -49.2 NC_001875.2 + 118109 0.66 0.994985
Target:  5'- cCGCCUgcgCAAccGCAUUGccgccaaGGCGgGCg -3'
miRNA:   3'- -GCGGAaa-GUUu-CGUAACaa-----CCGCgCG- -5'
6775 3' -49.2 NC_001875.2 + 4560 0.66 0.994985
Target:  5'- gCGCacgUCGgcAAGCAaUGUUGcCGCGCu -3'
miRNA:   3'- -GCGgaaAGU--UUCGUaACAACcGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 12839 0.66 0.994985
Target:  5'- gGCCacguagUC-GGGCAUc--UGGCGCGCa -3'
miRNA:   3'- gCGGaa----AGuUUCGUAacaACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 69580 0.66 0.994825
Target:  5'- aCGCaggugUCGGAGUAcgUGUggcgcuuuacgcGGCGCGCg -3'
miRNA:   3'- -GCGgaa--AGUUUCGUa-ACAa-----------CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 107511 0.67 0.994146
Target:  5'- aCGCCg--C--GGCAcgcUUGUUGGCGcCGUu -3'
miRNA:   3'- -GCGGaaaGuuUCGU---AACAACCGC-GCG- -5'
6775 3' -49.2 NC_001875.2 + 12417 0.67 0.994146
Target:  5'- uGCCgcgCGccAAGCAggccGUUGcGUGCGCg -3'
miRNA:   3'- gCGGaaaGU--UUCGUaa--CAAC-CGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 1250 0.67 0.994146
Target:  5'- gCGCaaUUUAAacAGUGUU-UUGGCGCGCa -3'
miRNA:   3'- -GCGgaAAGUU--UCGUAAcAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 47752 0.67 0.994146
Target:  5'- aGCaCUUcaAAAGCAUUGaagaGGCGgGCg -3'
miRNA:   3'- gCG-GAAagUUUCGUAACaa--CCGCgCG- -5'
6775 3' -49.2 NC_001875.2 + 19099 0.67 0.994146
Target:  5'- -cCCga-CAGGGCcgUGUUGcuguGCGCGCg -3'
miRNA:   3'- gcGGaaaGUUUCGuaACAAC----CGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 22989 0.67 0.994146
Target:  5'- gCGCCgc-CAAGaucugcGCGUUuugGGCGCGCa -3'
miRNA:   3'- -GCGGaaaGUUU------CGUAAcaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 121401 0.67 0.993781
Target:  5'- gCGCCgcgUCAAAGCugcugcgccaaaUGUUGGguaGUGCa -3'
miRNA:   3'- -GCGGaa-AGUUUCGua----------ACAACCg--CGCG- -5'
6775 3' -49.2 NC_001875.2 + 99332 0.67 0.993592
Target:  5'- aCGUUgcgCGAAGCGUcGUguccgcgcaacuugGGCGCGCc -3'
miRNA:   3'- -GCGGaaaGUUUCGUAaCAa-------------CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 63803 0.67 0.993199
Target:  5'- gGCCg--CAAAccGCu---UUGGCGCGCa -3'
miRNA:   3'- gCGGaaaGUUU--CGuaacAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 109994 0.67 0.993199
Target:  5'- aCGCgCggUCGGuGGCGUUGacGcGCGCGCa -3'
miRNA:   3'- -GCG-GaaAGUU-UCGUAACaaC-CGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 131209 0.67 0.993199
Target:  5'- aCGCUg--CAAAcGCAg----GGCGCGCu -3'
miRNA:   3'- -GCGGaaaGUUU-CGUaacaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 125127 0.67 0.993199
Target:  5'- gCGCaauuguggCGGGGCAUggUGUacaaaUGGCGUGCg -3'
miRNA:   3'- -GCGgaaa----GUUUCGUA--ACA-----ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 129102 0.67 0.992892
Target:  5'- gCGCCUUUCAAugacAGCGacgacgacgaacgcUUGUUGGaGCa- -3'
miRNA:   3'- -GCGGAAAGUU----UCGU--------------AACAACCgCGcg -5'
6775 3' -49.2 NC_001875.2 + 105613 0.67 0.990937
Target:  5'- gCGCCa---AGAGCgGUUGcacgugUGGUGCGCa -3'
miRNA:   3'- -GCGGaaagUUUCG-UAACa-----ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 27973 0.67 0.990937
Target:  5'- gGCUUUUUAAGGaccaa--GGCGCGCg -3'
miRNA:   3'- gCGGAAAGUUUCguaacaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 3040 0.67 0.990937
Target:  5'- aCGCCguugggCAgcGCGUaagaGGCGCGCa -3'
miRNA:   3'- -GCGGaaa---GUuuCGUAacaaCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.