miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6775 5' -53.8 NC_001875.2 + 42365 0.66 0.94091
Target:  5'- cGGCGCgaggGCGCCACuUUUG-CcGUGGCg -3'
miRNA:   3'- aCUGCG----UGCGGUGcAAACuGaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 105547 0.66 0.938
Target:  5'- uUGGCGUgACGCCcacggGCGUguUUGACgccgucuacaucaugUGCGGCa -3'
miRNA:   3'- -ACUGCG-UGCGG-----UGCA--AACUG---------------ACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 105434 0.66 0.936009
Target:  5'- cGAuUGCAUGCCgGCGUUUG---GCGACa -3'
miRNA:   3'- aCU-GCGUGCGG-UGCAAACugaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 96452 0.66 0.936009
Target:  5'- -cGCGCGCGCCACG---GACaGCaGCg -3'
miRNA:   3'- acUGCGUGCGGUGCaaaCUGaCGcUG- -5'
6775 5' -53.8 NC_001875.2 + 119417 0.66 0.936009
Target:  5'- -cGCGCACGCaACGgccugcUUGGCgcGCGGCa -3'
miRNA:   3'- acUGCGUGCGgUGCa-----AACUGa-CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 81008 0.66 0.936009
Target:  5'- aGGCGCGCGaCGCGUU--GCUGCc-- -3'
miRNA:   3'- aCUGCGUGCgGUGCAAacUGACGcug -5'
6775 5' -53.8 NC_001875.2 + 21512 0.66 0.936009
Target:  5'- -cACGCACGCCca--UUGGCUGUGGu -3'
miRNA:   3'- acUGCGUGCGGugcaAACUGACGCUg -5'
6775 5' -53.8 NC_001875.2 + 94867 0.66 0.936009
Target:  5'- -cACGUACGCCaggcGCGUUUGAaaCUGCu-- -3'
miRNA:   3'- acUGCGUGCGG----UGCAAACU--GACGcug -5'
6775 5' -53.8 NC_001875.2 + 10866 0.66 0.936009
Target:  5'- cGACGCGgugGCCGCGUcggUGgcGCUGCcGCg -3'
miRNA:   3'- aCUGCGUg--CGGUGCAa--AC--UGACGcUG- -5'
6775 5' -53.8 NC_001875.2 + 30196 0.66 0.936009
Target:  5'- uUGGCGCcguuCGCCGCGac-GGCcguUGUGGCg -3'
miRNA:   3'- -ACUGCGu---GCGGUGCaaaCUG---ACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 90441 0.66 0.930856
Target:  5'- aGACGCGCGCgCagagGCGUcgGuggGCGGCg -3'
miRNA:   3'- aCUGCGUGCG-G----UGCAaaCugaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 46489 0.66 0.930856
Target:  5'- cGaACGC-CGCCACGgcgucGGCguucGCGGCg -3'
miRNA:   3'- aC-UGCGuGCGGUGCaaa--CUGa---CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 32425 0.66 0.930856
Target:  5'- cGGCGCugGCCAacaaUGcGCUGCG-Cg -3'
miRNA:   3'- aCUGCGugCGGUgcaaAC-UGACGCuG- -5'
6775 5' -53.8 NC_001875.2 + 79131 0.67 0.925452
Target:  5'- cGGCGgGCGCCGCGgcgGGCUcguuugccaCGGCg -3'
miRNA:   3'- aCUGCgUGCGGUGCaaaCUGAc--------GCUG- -5'
6775 5' -53.8 NC_001875.2 + 19126 0.67 0.925452
Target:  5'- cGACGCGCcuaCCACGgc-GGCgccgucaGCGACa -3'
miRNA:   3'- aCUGCGUGc--GGUGCaaaCUGa------CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 55320 0.67 0.925452
Target:  5'- aGugGCGCGCgACGgugaUGAC-GCGcCg -3'
miRNA:   3'- aCugCGUGCGgUGCaa--ACUGaCGCuG- -5'
6775 5' -53.8 NC_001875.2 + 73695 0.67 0.925452
Target:  5'- cGGCGgcUGCUGCGgc-GGCUGCGGCu -3'
miRNA:   3'- aCUGCguGCGGUGCaaaCUGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 16263 0.67 0.925452
Target:  5'- -cGCGUGCGUCACGUggUGcCcgGCGACc -3'
miRNA:   3'- acUGCGUGCGGUGCAa-ACuGa-CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 127220 0.67 0.924897
Target:  5'- cUGACGCuuuCGCCGuacaccgUGUUUGAgcGCGGCc -3'
miRNA:   3'- -ACUGCGu--GCGGU-------GCAAACUgaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 91756 0.67 0.923219
Target:  5'- gUGGCGCgucaGCGCCGCGgccucgucguAgUGCGGCg -3'
miRNA:   3'- -ACUGCG----UGCGGUGCaaac------UgACGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.